Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   J9312_RS14110 Genome accession   NZ_CP072845
Coordinates   2604665..2605411 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain XP     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2599665..2610411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9312_RS14085 (J9312_13980) mreC 2600071..2600943 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  J9312_RS14090 (J9312_13985) mreB 2600974..2601987 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  J9312_RS14095 (J9312_13990) radC 2602079..2602774 (-) 696 WP_014480455.1 RadC family protein -
  J9312_RS14100 (J9312_13995) maf 2602811..2603380 (-) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  J9312_RS14105 (J9312_14000) spoIIB 2603533..2604531 (-) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  J9312_RS14110 (J9312_14005) comC 2604665..2605411 (-) 747 WP_072592551.1 prepilin peptidase Machinery gene
  J9312_RS14115 (J9312_14010) folC 2605551..2606843 (-) 1293 WP_014480460.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  J9312_RS14120 (J9312_14015) valS 2606903..2609545 (-) 2643 WP_264379332.1 valine--tRNA ligase -
  J9312_RS14125 (J9312_14020) - 2609993..2610184 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=556219 J9312_RS14110 WP_072592551.1 2604665..2605411(-) (comC) [Bacillus subtilis strain XP]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=556219 J9312_RS14110 WP_072592551.1 2604665..2605411(-) (comC) [Bacillus subtilis strain XP]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGAGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996