Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   J9312_RS12340 Genome accession   NZ_CP072845
Coordinates   2303495..2304298 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain XP     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2298495..2309298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9312_RS12315 (J9312_12235) glpQB 2299633..2300364 (-) 732 WP_043857797.1 glycerophosphodiester phosphodiesterase -
  J9312_RS12320 (J9312_12240) yqiI 2300443..2301063 (-) 621 WP_087614617.1 N-acetylmuramoyl-L-alanine amidase family protein -
  J9312_RS12325 (J9312_12245) - 2301083..2301379 (-) 297 WP_014480225.1 hypothetical protein -
  J9312_RS12330 (J9312_12250) - 2301687..2301839 (+) 153 WP_121590947.1 hypothetical protein -
  J9312_RS12335 (J9312_12255) yqiG 2301912..2303030 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  J9312_RS12340 (J9312_12260) spo0A 2303495..2304298 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  J9312_RS12345 (J9312_12265) spoIVB 2304574..2305854 (-) 1281 WP_014480228.1 SpoIVB peptidase -
  J9312_RS12350 (J9312_12270) recN 2306029..2307759 (-) 1731 WP_014480229.1 DNA repair protein RecN Machinery gene
  J9312_RS12355 (J9312_12275) argR 2307796..2308245 (-) 450 WP_003230265.1 arginine repressor ArgR -
  J9312_RS12360 (J9312_12280) yqxC 2308343..2309188 (-) 846 WP_031600677.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=556200 J9312_RS12340 WP_003226427.1 2303495..2304298(-) (spo0A) [Bacillus subtilis strain XP]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=556200 J9312_RS12340 WP_003226427.1 2303495..2304298(-) (spo0A) [Bacillus subtilis strain XP]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1