Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   J9312_RS09040 Genome accession   NZ_CP072845
Coordinates   1714046..1714825 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain XP     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1709046..1719825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9312_RS09020 (J9312_08970) trmFO 1709739..1711046 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  J9312_RS09025 (J9312_08975) xerC 1711114..1712028 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  J9312_RS09030 (J9312_08980) clpQ 1712041..1712586 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  J9312_RS09035 (J9312_08985) hslU 1712603..1714006 (+) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  J9312_RS09040 (J9312_08990) codY 1714046..1714825 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  J9312_RS09045 (J9312_08995) flgB 1715205..1715594 (+) 390 WP_014479778.1 flagellar basal body rod protein FlgB -
  J9312_RS09050 (J9312_09000) flgC 1715594..1716046 (+) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  J9312_RS09055 (J9312_09005) fliE 1716057..1716377 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  J9312_RS09060 (J9312_09010) fliF 1716423..1718033 (+) 1611 WP_046160402.1 flagellar basal-body MS-ring/collar protein FliF -
  J9312_RS09065 (J9312_09015) fliG 1718046..1719062 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  J9312_RS09070 (J9312_09020) fliH 1719055..1719807 (+) 753 WP_014479782.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=556196 J9312_RS09040 WP_003220850.1 1714046..1714825(+) (codY) [Bacillus subtilis strain XP]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=556196 J9312_RS09040 WP_003220850.1 1714046..1714825(+) (codY) [Bacillus subtilis strain XP]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467