Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   J9312_RS08180 Genome accession   NZ_CP072845
Coordinates   1541788..1542066 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain XP     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1536788..1547066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9312_RS08160 (J9312_08110) panEB 1537976..1538887 (+) 912 WP_014479685.1 ketopantoate reductase family protein -
  J9312_RS08165 (J9312_08115) ampS 1538921..1540153 (-) 1233 WP_003232341.1 aminopeptidase -
  J9312_RS08170 (J9312_08120) ykpC 1540262..1540396 (-) 135 WP_003238865.1 protein YkpC -
  J9312_RS08175 (J9312_08125) mreBH 1540497..1541504 (-) 1008 WP_069964461.1 cell shape-determining protein MreBH -
  J9312_RS08180 (J9312_08130) abrB 1541788..1542066 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  J9312_RS08185 (J9312_08135) kinC 1542256..1543542 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  J9312_RS08190 (J9312_08140) ykqA 1543558..1544391 (+) 834 WP_014479687.1 gamma-glutamylcyclotransferase -
  J9312_RS08195 (J9312_08145) ktrC 1544454..1545119 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  J9312_RS08200 (J9312_08150) ade 1545274..1547007 (+) 1734 WP_069837481.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=556194 J9312_RS08180 WP_003244728.1 1541788..1542066(+) (abrB) [Bacillus subtilis strain XP]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=556194 J9312_RS08180 WP_003244728.1 1541788..1542066(+) (abrB) [Bacillus subtilis strain XP]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576