Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   J9312_RS08060 Genome accession   NZ_CP072845
Coordinates   1517711..1518286 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain XP     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1512711..1523286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9312_RS08030 (J9312_07980) dapD 1512899..1513609 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  J9312_RS08035 (J9312_07985) dapI 1513679..1514803 (+) 1125 WP_014476668.1 N-acetyldiaminopimelate deacetylase -
  J9312_RS08040 (J9312_07990) ykuS 1514865..1515110 (+) 246 WP_003232382.1 YkuS family protein -
  J9312_RS08045 (J9312_07995) mscT 1515147..1515950 (-) 804 WP_029317733.1 small-conductance mechanosensitive channel protein MscT -
  J9312_RS08050 (J9312_08000) ahpA 1516187..1516729 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  J9312_RS08055 (J9312_08005) ykuV 1516799..1517245 (+) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  J9312_RS08060 (J9312_08010) rok 1517711..1518286 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  J9312_RS08065 (J9312_08015) cse15 1518327..1519292 (-) 966 WP_029317734.1 spore protein Cse15 -
  J9312_RS08070 (J9312_08020) mobA 1519429..1520028 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  J9312_RS08075 (J9312_08025) moeB 1520079..1521098 (+) 1020 WP_029317735.1 molybdopterin-synthase adenylyltransferase MoeB -
  J9312_RS08080 (J9312_08030) glp 1521116..1522408 (+) 1293 WP_029317736.1 gephyrin-like molybdotransferase Glp -
  J9312_RS08085 (J9312_08035) mobB 1522369..1522890 (+) 522 WP_046160345.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=556193 J9312_RS08060 WP_003232378.1 1517711..1518286(+) (rok) [Bacillus subtilis strain XP]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=556193 J9312_RS08060 WP_003232378.1 1517711..1518286(+) (rok) [Bacillus subtilis strain XP]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1