Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   J9312_RS00250 Genome accession   NZ_CP072845
Coordinates   45752..46045 (-) Length   97 a.a.
NCBI ID   WP_264379398.1    Uniprot ID   -
Organism   Bacillus subtilis strain XP     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 44432..45670 45752..46045 flank 82


Gene organization within MGE regions


Location: 44432..46045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9312_RS00245 (J9312_00245) - 44432..45679 (-) 1248 WP_031600262.1 IS256-like element ISBsu2 family transposase -
  J9312_RS00250 (J9312_00250) abrB 45752..46045 (-) 294 WP_264379398.1 transition state genes transcriptional regulator AbrB Regulator

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10717.58 Da        Isoelectric Point: 5.1848

>NTDB_id=556166 J9312_RS00250 WP_264379398.1 45752..46045(-) (abrB) [Bacillus subtilis strain XP]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNGSVILTV

Nucleotide


Download         Length: 294 bp        

>NTDB_id=556166 J9312_RS00250 WP_264379398.1 45752..46045(-) (abrB) [Bacillus subtilis strain XP]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACGGGAGTGTAATATTAACTGTGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

92.784

0.928