Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   J9B93_RS13090 Genome accession   NZ_CP072843
Coordinates   2694572..2695324 (-) Length   250 a.a.
NCBI ID   WP_044053500.1    Uniprot ID   -
Organism   Bacillus velezensis strain VY03     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2689572..2700324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9B93_RS13060 (J9B93_13060) - 2689917..2690351 (+) 435 WP_046559964.1 helix-turn-helix domain-containing protein -
  J9B93_RS13065 (J9B93_13065) - 2690365..2690811 (+) 447 WP_015968241.1 ImmA/IrrE family metallo-endopeptidase -
  J9B93_RS13070 (J9B93_13070) - 2690857..2692281 (+) 1425 WP_046559965.1 recombinase family protein -
  J9B93_RS13075 (J9B93_13075) radC 2692294..2692701 (-) 408 Protein_2550 RadC family protein -
  J9B93_RS13080 (J9B93_13080) - 2692733..2693302 (-) 570 WP_014305513.1 Maf family protein -
  J9B93_RS13085 (J9B93_13085) - 2693444..2694445 (-) 1002 WP_003152644.1 SPOR domain-containing protein -
  J9B93_RS13090 (J9B93_13090) comC 2694572..2695324 (-) 753 WP_044053500.1 prepilin peptidase Machinery gene
  J9B93_RS13095 (J9B93_13095) - 2695464..2696756 (-) 1293 WP_014305515.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  J9B93_RS13100 (J9B93_13100) - 2696815..2699457 (-) 2643 WP_014305516.1 valine--tRNA ligase -
  J9B93_RS13105 (J9B93_13105) - 2699910..2700101 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27182.83 Da        Isoelectric Point: 9.2521

>NTDB_id=556120 J9B93_RS13090 WP_044053500.1 2694572..2695324(-) (comC) [Bacillus velezensis strain VY03]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLTSGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=556120 J9B93_RS13090 WP_044053500.1 2694572..2695324(-) (comC) [Bacillus velezensis strain VY03]
GTGCTTTTAATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCT
TTTTACATCAAGCTCACTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584