Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J9B93_RS07965 Genome accession   NZ_CP072843
Coordinates   1586225..1587124 (+) Length   299 a.a.
NCBI ID   WP_060386937.1    Uniprot ID   -
Organism   Bacillus velezensis strain VY03     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1581225..1592124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9B93_RS07945 (J9B93_07945) - 1581916..1583619 (+) 1704 WP_060386936.1 hypothetical protein -
  J9B93_RS07950 (J9B93_07950) - 1583616..1583897 (+) 282 WP_003154284.1 FlhB-like flagellar biosynthesis protein -
  J9B93_RS07955 (J9B93_07955) sucC 1584072..1585229 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  J9B93_RS07960 (J9B93_07960) sucD 1585258..1586160 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  J9B93_RS07965 (J9B93_07965) dprA 1586225..1587124 (+) 900 WP_060386937.1 DNA-processing protein DprA Machinery gene
  J9B93_RS07970 (J9B93_07970) topA 1587306..1589381 (+) 2076 WP_003154274.1 type I DNA topoisomerase -
  J9B93_RS07975 (J9B93_07975) trmFO 1589446..1590753 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  J9B93_RS07980 (J9B93_07980) xerC 1590823..1591740 (+) 918 WP_210602116.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32793.85 Da        Isoelectric Point: 7.5073

>NTDB_id=556098 J9B93_RS07965 WP_060386937.1 1586225..1587124(+) (dprA) [Bacillus velezensis strain VY03]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGTEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=556098 J9B93_RS07965 WP_060386937.1 1586225..1587124(+) (dprA) [Bacillus velezensis strain VY03]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTACCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
ACCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGTTTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAACAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.234

100

0.702
  dprA Lactococcus lactis subsp. cremoris KW2

40.909

88.294

0.361