Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   J9B93_RS07115 Genome accession   NZ_CP072843
Coordinates   1372337..1372621 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain VY03     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1367337..1377621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9B93_RS07095 (J9B93_07095) - 1368584..1369492 (+) 909 WP_046559556.1 ketopantoate reductase family protein -
  J9B93_RS07100 (J9B93_07100) - 1369522..1370754 (-) 1233 WP_025851469.1 aminopeptidase -
  J9B93_RS07105 (J9B93_07105) - 1370855..1370989 (-) 135 WP_003154559.1 protein YkpC -
  J9B93_RS07110 (J9B93_07110) mreBH 1371061..1372068 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  J9B93_RS07115 (J9B93_07115) abrB 1372337..1372621 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  J9B93_RS07120 (J9B93_07120) - 1372795..1374099 (+) 1305 WP_014304932.1 ATP-binding protein -
  J9B93_RS07125 (J9B93_07125) - 1374101..1374928 (+) 828 WP_003154555.1 gamma-glutamylcyclotransferase -
  J9B93_RS07130 (J9B93_07130) ktrC 1374969..1375634 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  J9B93_RS07135 (J9B93_07135) ade 1375783..1377516 (+) 1734 WP_003154552.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=556097 J9B93_RS07115 WP_024085249.1 1372337..1372621(+) (abrB) [Bacillus velezensis strain VY03]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=556097 J9B93_RS07115 WP_024085249.1 1372337..1372621(+) (abrB) [Bacillus velezensis strain VY03]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTGATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGTAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543