Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   J9174_RS11440 Genome accession   NZ_CP072837
Coordinates   2211116..2212069 (-) Length   317 a.a.
NCBI ID   WP_210152281.1    Uniprot ID   -
Organism   Macrococcoides canis strain 19/EPI0118     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2206116..2217069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9174_RS11415 (J9174_11415) pta 2206310..2207299 (-) 990 WP_210152277.1 phosphate acetyltransferase -
  J9174_RS11420 (J9174_11420) hemQ 2207451..2208200 (+) 750 WP_210152278.1 hydrogen peroxide-dependent heme synthase -
  J9174_RS11425 (J9174_11425) - 2208238..2209278 (-) 1041 WP_210152279.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  J9174_RS11430 (J9174_11430) - 2209371..2210177 (-) 807 WP_138072666.1 ABC transporter ATP-binding protein -
  J9174_RS11435 (J9174_11435) - 2210170..2211123 (-) 954 WP_210152280.1 iron chelate uptake ABC transporter family permease subunit -
  J9174_RS11440 (J9174_11440) ceuB 2211116..2212069 (-) 954 WP_210152281.1 ABC transporter permease Machinery gene
  J9174_RS11445 (J9174_11445) - 2212249..2213601 (+) 1353 WP_133420094.1 APC family permease -
  J9174_RS11450 (J9174_11450) - 2213781..2215238 (-) 1458 WP_210152282.1 APC family permease -
  J9174_RS11455 (J9174_11455) - 2215385..2215747 (-) 363 WP_133420095.1 DUF423 domain-containing protein -
  J9174_RS11460 (J9174_11460) - 2215767..2216075 (-) 309 WP_086043482.1 DUF5327 family protein -
  J9174_RS11465 (J9174_11465) - 2216072..2216731 (-) 660 WP_164953954.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34785.49 Da        Isoelectric Point: 10.5554

>NTDB_id=556049 J9174_RS11440 WP_210152281.1 2211116..2212069(-) (ceuB) [Macrococcoides canis strain 19/EPI0118]
MKIIYTILLLLILSIISMFIGVVDLSPSNLLNLDENQKNILLNSRLPRTFAIILAGVALSVAGLLMQQLTRNKFVSPTTA
GTMDFAKFGVLIAMIFFAQAPLLIKLSFSIVSAIIGTMMFMWIVNRIKFKDAIFIPLVGLMLGNIVSSLATFMALRFNAM
QSISNFFVGDFSMITKGRYEVLFIIIPMVIVIYLFAHHFTIVGMGESFSKNLGISYAKIMNLGVIIAAIVSATVVVTIGV
LPFLGLIIPNIVGLFVGDHMNKALPYTALFGAILVMVADIFSRLIIFPYEIPIGLTLGIVGSVIFMAILLKRRKSYV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=556049 J9174_RS11440 WP_210152281.1 2211116..2212069(-) (ceuB) [Macrococcoides canis strain 19/EPI0118]
ATGAAAATAATTTACACCATACTACTGTTGCTGATTTTGTCTATAATCTCTATGTTTATTGGTGTTGTAGATTTAAGTCC
ATCAAATTTACTTAATTTAGATGAGAATCAAAAGAATATTTTGTTGAACAGTCGACTGCCGAGGACGTTTGCTATTATAT
TAGCGGGTGTTGCATTAAGTGTAGCTGGTTTATTAATGCAGCAGCTCACACGTAATAAATTTGTATCACCAACGACAGCA
GGTACGATGGATTTTGCGAAATTTGGTGTATTGATTGCAATGATATTCTTTGCACAGGCACCATTACTTATTAAATTATC
GTTCAGTATTGTTTCAGCGATTATCGGTACGATGATGTTTATGTGGATTGTCAATCGCATTAAGTTTAAGGATGCAATCT
TCATTCCGCTTGTAGGGCTCATGCTCGGTAACATCGTTTCAAGTTTAGCGACGTTTATGGCACTGCGTTTTAATGCGATG
CAAAGTATTTCTAACTTCTTTGTGGGAGATTTCTCGATGATAACGAAAGGGCGTTATGAAGTATTATTCATTATCATTCC
GATGGTTATCGTGATTTATCTCTTTGCACATCATTTTACAATCGTCGGAATGGGTGAATCTTTCAGTAAGAACTTAGGTA
TATCTTACGCAAAGATAATGAATCTCGGTGTTATTATTGCAGCAATTGTATCTGCAACAGTAGTGGTAACGATTGGGGTA
TTACCATTTTTAGGATTAATTATTCCGAATATTGTTGGATTGTTTGTCGGTGATCATATGAATAAAGCATTACCATACAC
AGCACTATTTGGTGCGATTCTCGTCATGGTAGCAGATATTTTCAGTCGATTGATCATCTTCCCTTACGAGATTCCAATCG
GTCTCACGCTTGGTATCGTTGGAAGTGTTATCTTTATGGCAATTCTCCTGAAGAGGAGGAAGTCATATGTCTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.837

96.845

0.483