Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   L0998_RS04365 Genome accession   NZ_CP090876
Coordinates   817762..818388 (-) Length   208 a.a.
NCBI ID   WP_054190672.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SAUR_BFS12     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 812762..823388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0998_RS04345 (L0998_04345) - 813387..814073 (+) 687 WP_054190670.1 DnaD domain-containing protein -
  L0998_RS04350 (L0998_04350) nth 814063..814722 (+) 660 WP_000253765.1 endonuclease III -
  L0998_RS04355 (L0998_04355) - 814727..815068 (+) 342 WP_054190671.1 YpoC family protein -
  L0998_RS04360 (L0998_04360) - 815582..817765 (-) 2184 WP_049307715.1 transglycosylase domain-containing protein -
  L0998_RS04365 (L0998_04365) recU 817762..818388 (-) 627 WP_054190672.1 Holliday junction resolvase RecU Machinery gene
  L0998_RS04370 (L0998_04370) - 818929..819279 (+) 351 WP_054190673.1 YppE family protein -
  L0998_RS04375 (L0998_04375) - 819272..819835 (+) 564 WP_000241308.1 DUF1273 domain-containing protein -
  L0998_RS04380 (L0998_04380) gpsB 819849..820193 (+) 345 WP_054190674.1 cell division regulator GpsB -
  L0998_RS04390 (L0998_04390) - 820844..821989 (+) 1146 WP_054190675.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  L0998_RS04395 (L0998_04395) - 822073..822405 (+) 333 WP_000516800.1 DUF4889 domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24443.77 Da        Isoelectric Point: 9.6288

>NTDB_id=555977 L0998_RS04365 WP_054190672.1 817762..818388(-) (recU) [Staphylococcus aureus strain SAUR_BFS12]
MNYPNGKPYRKNSAIDGGKKTTAFSNIEYGGRGMSLEKDIEHSNAFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNNTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEIFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=555977 L0998_RS04365 WP_054190672.1 817762..818388(-) (recU) [Staphylococcus aureus strain SAUR_BFS12]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCACTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATGCGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAGCGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAATACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TAGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAATATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

52.657

99.519

0.524