Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   L0998_RS04015 Genome accession   NZ_CP090876
Coordinates   745673..747352 (+) Length   559 a.a.
NCBI ID   WP_234873447.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SAUR_BFS12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 740673..752352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0998_RS03985 (L0998_03985) - 741529..741891 (+) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -
  L0998_RS03990 (L0998_03990) nusB 741951..742340 (+) 390 WP_000087385.1 transcription antitermination factor NusB -
  L0998_RS03995 (L0998_03995) xseA 742357..743694 (+) 1338 WP_054190014.1 exodeoxyribonuclease VII large subunit -
  L0998_RS04000 (L0998_04000) - 743687..743917 (+) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  L0998_RS04005 (L0998_04005) - 743895..744776 (+) 882 WP_054190013.1 polyprenyl synthetase family protein -
  L0998_RS04010 (L0998_04010) ahrC 745205..745657 (+) 453 WP_001124985.1 transcriptional regulator AhrC/ArgR -
  L0998_RS04015 (L0998_04015) recN 745673..747352 (+) 1680 WP_234873447.1 DNA repair protein RecN Machinery gene
  L0998_RS04020 (L0998_04020) lpdA 747503..748924 (+) 1422 WP_054190011.1 dihydrolipoyl dehydrogenase -
  L0998_RS04025 (L0998_04025) - 748940..749938 (+) 999 WP_054190010.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  L0998_RS04030 (L0998_04030) - 749931..750914 (+) 984 WP_054190009.1 alpha-ketoacid dehydrogenase subunit beta -
  L0998_RS04035 (L0998_04035) - 750927..752201 (+) 1275 WP_054190008.1 dihydrolipoamide acetyltransferase family protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64230.90 Da        Isoelectric Point: 4.7593

>NTDB_id=555974 L0998_RS04015 WP_234873447.1 745673..747352(+) (recN) [Staphylococcus aureus strain SAUR_BFS12]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLV
KYHQTFQNYKAKKQELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNFEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALHNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRCR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=555974 L0998_RS04015 WP_234873447.1 745673..747352(+) (recN) [Staphylococcus aureus strain SAUR_BFS12]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGTGAAATTTTCAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAATCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGTT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTCCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGCATTCAAAACTTTGAAAAATTAAGCTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGCAAATATGGAAAAGAC
ATTTCAGAATTAATCGCATATCAAGAAAAGCTAAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGCATAATCAAGTTATAGAGGTTGGACAAGCGTTATCAAAGCAACGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGATGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTCATATGCATTTCTCACTTGCCACAAGTAGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATAGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGAGAAAATGCAAGAGAGATGATACAACACAATCAAAGATGCAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.031

100

0.442