Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J9253_RS01790 Genome accession   NZ_CP072801
Coordinates   352874..354238 (-) Length   454 a.a.
NCBI ID   WP_210223037.1    Uniprot ID   -
Organism   Thiothrix litoralis strain AS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 347874..359238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9253_RS01770 (J9253_01770) argJ 348691..349899 (+) 1209 WP_210223033.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  J9253_RS01775 (J9253_01775) - 349880..350839 (+) 960 WP_210223034.1 Nudix family hydrolase -
  J9253_RS01780 (J9253_01780) - 350848..351051 (-) 204 WP_210223035.1 YdcH family protein -
  J9253_RS01785 (J9253_01785) - 351059..352672 (-) 1614 WP_210223036.1 DEAD/DEAH box helicase -
  J9253_RS01790 (J9253_01790) radA 352874..354238 (-) 1365 WP_210223037.1 DNA repair protein RadA Machinery gene
  J9253_RS01795 (J9253_01795) - 354231..355520 (-) 1290 WP_210223038.1 HlyC/CorC family transporter -
  J9253_RS01800 (J9253_01800) - 355523..356326 (-) 804 WP_210223039.1 inner membrane protein YpjD -
  J9253_RS01805 (J9253_01805) ffh 356458..357840 (+) 1383 WP_210223040.1 signal recognition particle protein -
  J9253_RS01810 (J9253_01810) - 358038..358319 (+) 282 WP_210223041.1 hypothetical protein -
  J9253_RS01815 (J9253_01815) - 358657..359028 (+) 372 WP_210223042.1 hypothetical protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48908.50 Da        Isoelectric Point: 8.3690

>NTDB_id=555917 J9253_RS01790 WP_210223037.1 352874..354238(-) (radA) [Thiothrix litoralis strain AS]
MSKAKHQYYCSACGSVHTKWGGQCGDCGAWNTLEETLSLPASKHPQNARAGGYAGEQAVIRSLHEVSLSEAPRILTHQPE
LDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTLATLTELKSLYVTGEESLQQVGLRARRLGLPTDNLRLLTETCVENILS
LVSQEKPHLMVIDSIQTVFTDSLQAAPGSISQIRESAAKLVRFAKQTNTAMFLVGHVTKEGTLAGPRVLEHMVDTVLYFE
GDPGGRYRIIRAVKNRFGAVNELGVFAMTEQGLKGVSNPSAIFLSRHEEPVSGSVIMVTREGTRPLMVEVQALVDQSHGA
VPRRVTLGLEQNRLSMLLAVLHRHAGISMFDQDVFINVVGGVKISETAADLSLLLAALSSFRNRPLPADLVVFGEVGLAG
EIRPVPNGEERLREAAKHGFKQAIVAKGNKPRHPIEGMKVVAIARLEKAIEIVM

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=555917 J9253_RS01790 WP_210223037.1 352874..354238(-) (radA) [Thiothrix litoralis strain AS]
ATGAGTAAAGCTAAACACCAATACTACTGCTCCGCCTGCGGCAGCGTGCATACCAAATGGGGCGGGCAATGCGGCGACTG
TGGCGCATGGAACACGCTGGAAGAAACCCTCAGCCTCCCCGCCAGCAAACACCCGCAAAACGCCCGCGCAGGCGGTTACG
CCGGTGAGCAAGCCGTCATCCGTTCCCTGCACGAAGTCAGCTTGAGCGAAGCCCCACGTATCCTTACCCACCAACCCGAA
CTCGACCGGGTACTGGGTGGCGGGCTGGTGGCCGGTTCCGTGGTATTGATTGGTGGCGACCCCGGCATCGGCAAATCCAC
CATCCTGCTGCAAACCCTTGCTACTCTGACCGAACTAAAAAGTTTGTATGTCACAGGTGAAGAATCCCTGCAACAAGTTG
GCCTACGCGCACGCCGCTTAGGGCTACCCACCGACAACTTGCGTCTGCTGACTGAAACTTGCGTGGAAAACATCCTGAGT
CTAGTTTCGCAAGAAAAACCGCATCTGATGGTAATCGACTCCATCCAGACTGTTTTCACCGACAGTCTGCAAGCCGCCCC
CGGCTCAATCAGCCAGATCCGCGAATCGGCAGCCAAGCTGGTGCGTTTCGCCAAGCAAACCAATACTGCGATGTTCCTCG
TCGGTCACGTCACCAAGGAAGGCACACTCGCAGGCCCACGCGTACTCGAACACATGGTCGACACCGTGTTGTATTTTGAA
GGCGACCCCGGCGGACGTTACCGCATTATCCGCGCCGTCAAAAACCGTTTCGGCGCTGTCAATGAGCTGGGCGTCTTTGC
CATGACCGAGCAAGGCTTGAAAGGTGTCAGCAACCCCTCCGCCATTTTCCTCTCACGCCACGAAGAGCCGGTTTCCGGCA
GTGTCATCATGGTAACGCGGGAAGGCACGCGCCCCTTGATGGTCGAAGTACAAGCCTTGGTCGACCAAAGTCACGGCGCA
GTACCGCGTCGTGTTACCCTTGGGCTGGAACAAAATCGTCTTTCCATGCTCTTAGCTGTACTGCATCGCCACGCCGGAAT
TTCAATGTTTGACCAAGATGTATTCATAAATGTCGTCGGTGGTGTTAAGATTTCAGAAACCGCTGCTGATTTATCCTTGT
TGCTGGCAGCACTCTCAAGTTTTCGCAACCGTCCTCTGCCTGCTGATCTAGTGGTTTTTGGAGAAGTTGGGCTGGCAGGC
GAGATTCGCCCGGTTCCAAACGGTGAGGAGCGTTTGCGTGAGGCTGCTAAACACGGTTTTAAACAGGCTATCGTCGCGAA
AGGCAACAAACCACGTCACCCGATTGAGGGCATGAAAGTGGTCGCCATCGCCAGATTGGAGAAAGCGATAGAAATTGTGA
TGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(344-429)

AAA domain (AAA_25)

(73-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.391

100

0.48
  radA Streptococcus mitis NCTC 12261

45.495

100

0.456
  radA Streptococcus mitis SK321

45.495

100

0.456
  radA Streptococcus pneumoniae Rx1

46.744

94.714

0.443
  radA Streptococcus pneumoniae D39

46.744

94.714

0.443
  radA Streptococcus pneumoniae R6

46.744

94.714

0.443
  radA Streptococcus pneumoniae TIGR4

46.744

94.714

0.443