Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   J9253_RS00350 Genome accession   NZ_CP072801
Coordinates   67664..68671 (-) Length   335 a.a.
NCBI ID   WP_210222788.1    Uniprot ID   -
Organism   Thiothrix litoralis strain AS     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 62664..73671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9253_RS00325 (J9253_00325) - 62873..64057 (+) 1185 WP_228291454.1 ABC transporter permease -
  J9253_RS00330 (J9253_00330) - 64054..65691 (+) 1638 WP_210222784.1 ABC transporter ATP-binding protein -
  J9253_RS00335 (J9253_00335) - 65699..65917 (-) 219 WP_210222785.1 hypothetical protein -
  J9253_RS00340 (J9253_00340) ftsX 66024..67013 (-) 990 WP_210222786.1 permease-like cell division protein FtsX -
  J9253_RS00345 (J9253_00345) ftsE 67013..67657 (-) 645 WP_210222787.1 cell division ATP-binding protein FtsE -
  J9253_RS00350 (J9253_00350) pilA 67664..68671 (-) 1008 WP_210222788.1 signal recognition particle-docking protein FtsY Machinery gene
  J9253_RS00355 (J9253_00355) - 68715..70139 (+) 1425 WP_210222789.1 pitrilysin family protein -
  J9253_RS00360 (J9253_00360) - 70145..71455 (+) 1311 WP_210222790.1 pitrilysin family protein -
  J9253_RS00365 (J9253_00365) rsmD 71445..71996 (+) 552 WP_210222791.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  J9253_RS00370 (J9253_00370) - 72077..72640 (+) 564 WP_210222792.1 C40 family peptidase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36050.62 Da        Isoelectric Point: 6.0587

>NTDB_id=555916 J9253_RS00350 WP_210222788.1 67664..68671(-) (pilA) [Thiothrix litoralis strain AS]
MFGFGKKKNQELPENTPAVPQESPAAPAEGLFARLKRGLSKTSNALIMGMDTLVMGKKQIDDDVLEELETRLLMADVGIE
ATREIMDDLTSRVNRAELADMDAMMQALYNKVHDILRSAAQPLKIDSSHKPFVLLMVGINGAGKTTTIGKLAKKFQQDGK
SVMLAAGDTFRAAAVEQLTIWGERNHIPVIAQGSGADSASVIFDAVQAAKARKIDVLLADTAGRLHTQTNLMDELKKVKR
VIQKLDGSAPHEIMLIVDASIGQNALVQAKQFNEALGLTGITVTKLDGTAKGGILLAIAQQLKVPVRFIGVGESIDDLQE
FDAYEFTSALLTGNS

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=555916 J9253_RS00350 WP_210222788.1 67664..68671(-) (pilA) [Thiothrix litoralis strain AS]
ATGTTTGGATTCGGAAAGAAAAAAAACCAGGAATTGCCTGAAAACACCCCTGCGGTGCCTCAAGAATCACCAGCCGCTCC
GGCGGAAGGTTTGTTCGCGCGTCTGAAACGCGGCCTCTCCAAAACCAGTAATGCCCTGATCATGGGTATGGATACGCTGG
TTATGGGCAAAAAGCAAATTGACGACGATGTGCTGGAGGAATTGGAAACCCGTTTATTGATGGCAGATGTCGGCATAGAG
GCCACCCGCGAAATCATGGACGACCTCACCAGCCGGGTCAACCGCGCCGAACTGGCAGATATGGATGCCATGATGCAGGC
TCTGTACAATAAGGTACACGACATCCTGCGCTCGGCTGCACAACCGCTGAAAATCGACAGCAGCCACAAACCGTTTGTGC
TACTGATGGTCGGCATTAATGGTGCGGGTAAAACCACCACCATTGGCAAGCTTGCGAAAAAATTCCAGCAAGACGGCAAA
TCGGTGATGCTAGCCGCAGGCGACACCTTCCGCGCCGCAGCCGTGGAACAGCTCACCATCTGGGGCGAACGCAACCATAT
CCCGGTGATTGCCCAAGGCAGCGGGGCTGATTCGGCTTCGGTGATCTTCGATGCGGTGCAAGCGGCCAAAGCCCGCAAAA
TCGACGTGCTGCTGGCGGATACCGCCGGGCGCTTGCACACGCAAACCAATTTGATGGATGAGCTGAAAAAAGTGAAGCGC
GTCATCCAAAAACTGGACGGTTCCGCCCCGCATGAAATCATGCTGATCGTGGACGCCAGTATCGGCCAGAATGCTTTGGT
ACAAGCCAAACAATTCAACGAAGCATTAGGGCTGACGGGTATTACCGTCACCAAACTCGACGGGACTGCCAAAGGTGGCA
TCCTGCTCGCTATTGCCCAACAACTTAAAGTCCCGGTACGCTTTATCGGCGTGGGTGAAAGCATTGATGACCTTCAGGAA
TTCGATGCCTATGAATTCACCAGCGCCCTGCTTACCGGGAATAGTTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(55-110)

SRP54-type protein, GTPase domain (SRP54)

(131-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

57.616

90.149

0.519