Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   J9260_RS03020 Genome accession   NZ_CP072793
Coordinates   558236..559246 (-) Length   336 a.a.
NCBI ID   WP_210219580.1    Uniprot ID   -
Organism   Thiothrix unzii strain A1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 553236..564246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9260_RS03000 (J9260_02995) - 553785..554966 (+) 1182 WP_210219576.1 ABC transporter permease -
  J9260_RS03005 (J9260_03000) - 554963..556591 (+) 1629 WP_210219577.1 dipeptide ABC transporter ATP-binding protein -
  J9260_RS03010 (J9260_03005) ftsX 556593..557579 (-) 987 WP_210219578.1 permease-like cell division protein FtsX -
  J9260_RS03015 (J9260_03010) ftsE 557576..558223 (-) 648 WP_210219579.1 cell division ATP-binding protein FtsE -
  J9260_RS03020 (J9260_03015) pilA 558236..559246 (-) 1011 WP_210219580.1 signal recognition particle-docking protein FtsY Machinery gene
  J9260_RS03025 (J9260_03020) - 559292..560716 (+) 1425 WP_210219581.1 pitrilysin family protein -
  J9260_RS03030 (J9260_03025) - 560722..562035 (+) 1314 WP_210219582.1 pitrilysin family protein -
  J9260_RS03035 (J9260_03030) rsmD 562025..562579 (+) 555 WP_210219583.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  J9260_RS03040 (J9260_03035) - 562652..563833 (+) 1182 WP_210219584.1 lytic murein transglycosylase -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 36357.96 Da        Isoelectric Point: 6.5098

>NTDB_id=555877 J9260_RS03020 WP_210219580.1 558236..559246(-) (pilA) [Thiothrix unzii strain A1]
MFGFGKKKNQELADVSPSPQPVAQPVTQDAGLFARLKRGLSKTSNTLTEGMSALVLGKKKVDDEVLEELEMRLLTADVGV
DATRAIMSDLSSRVSRNELADMDALMQALYNKMHRILRPCAQPLEIVSEHQPFVILMVGINGAGKTTTIGKLAKKFQQQG
KSVMLAAGDTFRAAAVEQLTIWGERNQIPVIAQGNGADSASVIFDAVQAAKARKIDILLADTAGRLHTQTNLMDELKKVK
RVIQKFDKQAPHEVMLIVDASIGQNALVQARQFNEALGLTGITVTKLDGTAKGGILFAIAEQLKIPVRFIGVGESIDDLQ
EFDAYEFTSALLAGDD

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=555877 J9260_RS03020 WP_210219580.1 558236..559246(-) (pilA) [Thiothrix unzii strain A1]
ATGTTTGGATTCGGAAAGAAAAAAAACCAGGAATTGGCTGACGTTAGCCCTTCCCCTCAACCCGTAGCGCAACCCGTCAC
ACAAGATGCGGGTTTGTTTGCACGCTTAAAACGCGGCCTTTCAAAAACCAGTAATACGCTCACCGAAGGAATGAGTGCCC
TGGTATTAGGCAAGAAGAAGGTCGATGATGAGGTTCTTGAGGAATTAGAAATGCGCTTGCTGACTGCCGATGTGGGTGTG
GATGCCACTCGCGCAATCATGAGCGACCTGTCGAGCCGTGTCAGCCGCAACGAACTGGCGGACATGGACGCACTGATGCA
AGCTCTTTACAACAAGATGCACCGCATTTTGCGCCCCTGCGCTCAACCGTTGGAAATCGTTTCGGAACATCAACCGTTTG
TGATTTTAATGGTTGGCATTAACGGCGCGGGTAAAACCACCACGATTGGTAAACTCGCCAAAAAATTCCAGCAGCAAGGT
AAATCGGTAATGTTGGCAGCAGGTGATACGTTTCGCGCCGCAGCGGTGGAACAGCTCACCATTTGGGGCGAACGCAACCA
GATTCCGGTGATTGCGCAAGGCAACGGTGCGGATTCTGCCTCGGTTATTTTCGACGCGGTGCAGGCCGCCAAAGCGCGTA
AGATTGATATTTTGCTCGCCGATACCGCTGGTCGGTTACACACGCAAACTAACCTGATGGATGAGTTGAAAAAAGTTAAA
CGTGTGATACAAAAGTTTGATAAACAAGCCCCGCACGAAGTGATGCTGATTGTGGACGCGAGTATCGGGCAAAACGCCTT
GGTACAAGCCCGGCAATTTAACGAAGCTTTAGGTCTGACGGGGATTACGGTCACAAAATTGGACGGGACTGCCAAAGGCG
GTATCCTGTTCGCGATTGCCGAACAACTGAAAATTCCGGTACGTTTCATTGGCGTAGGTGAAAGCATTGACGACTTGCAA
GAGTTTGATGCTTACGAATTCACCAGTGCCTTGCTTGCCGGAGATGATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(47-113)

SRP54-type protein, GTPase domain (SRP54)

(132-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

56.954

89.881

0.512