Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   L0999_RS12740 Genome accession   NZ_CP090870
Coordinates   2513522..2514673 (+) Length   383 a.a.
NCBI ID   WP_000020347.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SAUR_BFS62     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 2508522..2519673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0999_RS12715 (L0999_12715) yfmH 2509353..2510639 (+) 1287 WP_000664775.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  L0999_RS12720 (L0999_12720) ymfI 2510639..2511343 (+) 705 WP_000646228.1 elongation factor P 5-aminopentanone reductase -
  L0999_RS12725 (L0999_12725) - 2511448..2512275 (+) 828 WP_000214890.1 YmfK family protein -
  L0999_RS12730 (L0999_12730) - 2512294..2512686 (+) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  L0999_RS12735 (L0999_12735) pgsA 2512720..2513298 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L0999_RS12740 (L0999_12740) cinA 2513522..2514673 (+) 1152 WP_000020347.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  L0999_RS12745 (L0999_12745) recA 2514838..2515881 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  L0999_RS12750 (L0999_12750) rny 2516235..2517794 (+) 1560 WP_001050913.1 ribonuclease Y -
  L0999_RS12755 (L0999_12755) - 2518091..2518306 (-) 216 WP_000026308.1 hypothetical protein -
  L0999_RS12760 (L0999_12760) - 2518480..2519277 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43265.58 Da        Isoelectric Point: 6.1914

>NTDB_id=555838 L0999_RS12740 WP_000020347.1 2513522..2514673(+) (cinA) [Staphylococcus aureus strain SAUR_BFS62]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYVLIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=555838 L0999_RS12740 WP_000020347.1 2513522..2514673(+) (cinA) [Staphylococcus aureus strain SAUR_BFS62]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGTGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433