Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J8615_RS08035 Genome accession   NZ_CP072791
Coordinates   1596136..1597035 (+) Length   299 a.a.
NCBI ID   WP_219984726.1    Uniprot ID   -
Organism   Bacillus velezensis strain GS-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1591136..1602035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8615_RS08015 (J8615_08005) - 1591827..1593530 (+) 1704 WP_139885270.1 glycosyl transferase -
  J8615_RS08020 (J8615_08010) - 1593527..1593808 (+) 282 WP_003154284.1 FlhB-like flagellar biosynthesis protein -
  J8615_RS08025 (J8615_08015) sucC 1593983..1595140 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  J8615_RS08030 (J8615_08020) sucD 1595169..1596071 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  J8615_RS08035 (J8615_08025) dprA 1596136..1597035 (+) 900 WP_219984726.1 DNA-processing protein DprA Machinery gene
  J8615_RS08040 (J8615_08030) topA 1597217..1599292 (+) 2076 WP_003154274.1 type I DNA topoisomerase -
  J8615_RS08045 (J8615_08035) trmFO 1599357..1600664 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  J8615_RS08050 (J8615_08040) xerC 1600734..1601651 (+) 918 WP_043867088.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32865.03 Da        Isoelectric Point: 7.7756

>NTDB_id=555829 J8615_RS08035 WP_219984726.1 1596136..1597035(+) (dprA) [Bacillus velezensis strain GS-1]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRVKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYCGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=555829 J8615_RS08035 WP_219984726.1 1596136..1597035(+) (dprA) [Bacillus velezensis strain GS-1]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTTATT
CCGATTTCATCAAGCCGCTACCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
ACCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGTAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTGCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.234

100

0.702
  dprA Lactococcus lactis subsp. cremoris KW2

40.909

88.294

0.361