Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   L0999_RS06545 Genome accession   NZ_CP090870
Coordinates   1246001..1247113 (+) Length   370 a.a.
NCBI ID   WP_016170584.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SAUR_BFS62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1241001..1252113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0999_RS06520 (L0999_06520) rnpA 1241264..1241617 (-) 354 WP_001789343.1 ribonuclease P protein component -
  L0999_RS06525 (L0999_06525) rpmH 1241738..1241875 (-) 138 WP_000240855.1 50S ribosomal protein L34 -
  L0999_RS06530 (L0999_06530) dnaA 1242606..1243967 (+) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  L0999_RS06535 (L0999_06535) dnaN 1244245..1245378 (+) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  L0999_RS06540 (L0999_06540) yaaA 1245759..1246004 (+) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  L0999_RS06545 (L0999_06545) recF 1246001..1247113 (+) 1113 WP_016170584.1 DNA replication/repair protein RecF Machinery gene
  L0999_RS06550 (L0999_06550) gyrB 1247123..1249057 (+) 1935 WP_000255578.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  L0999_RS06555 (L0999_06555) gyrA 1249094..1251763 (+) 2670 WP_000819096.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42383.37 Da        Isoelectric Point: 6.4362

>NTDB_id=555800 L0999_RS06545 WP_016170584.1 1246001..1247113(+) (recF) [Staphylococcus aureus strain SAUR_BFS62]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGVDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=555800 L0999_RS06545 WP_016170584.1 1246001..1247113(+) (recF) [Staphylococcus aureus strain SAUR_BFS62]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTAAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCGTGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

49.062

100

0.495