Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   LT978_RS19715 Genome accession   NZ_CP090838
Coordinates   3939224..3940051 (-) Length   275 a.a.
NCBI ID   WP_004264723.1    Uniprot ID   A7Z0F5
Organism   Bacillus amyloliquefaciens strain TL106     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3934224..3945051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS19690 (LT978_19685) abrB 3936564..3936854 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  LT978_RS19695 (LT978_19690) rsmI 3936904..3937785 (-) 882 WP_070081259.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LT978_RS19700 (LT978_19695) - 3937760..3938059 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  LT978_RS19705 (LT978_19700) - 3938046..3938789 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LT978_RS19710 (LT978_19705) yabA 3938850..3939209 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  LT978_RS19715 (LT978_19710) yaaT 3939224..3940051 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT Regulator
  LT978_RS19720 (LT978_19715) holB 3940054..3941043 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  LT978_RS19725 (LT978_19720) - 3941055..3941495 (-) 441 WP_004264730.1 DUF327 family protein -
  LT978_RS19730 (LT978_19725) darA 3941508..3941837 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  LT978_RS19735 (LT978_19730) tmk 3941908..3942546 (-) 639 WP_139890524.1 dTMP kinase -
  LT978_RS19740 (LT978_19735) - 3942543..3943976 (-) 1434 WP_109567815.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 275 a.a.        Molecular weight: 31160.93 Da        Isoelectric Point: 4.6504

>NTDB_id=555754 LT978_RS19715 WP_004264723.1 3939224..3940051(-) (yaaT) [Bacillus amyloliquefaciens strain TL106]
MYNVIGVRFKKAGKIYYFDPNGFDIEQDSCVIVETVRGVEYGQVVIANKQVDEHDVVLPLRKVIRVADERDLLIVEENKQ
EALSAFEVCQKKVADHGLDMKLVDVEFTFDRNKVIFYFTADGRVDFRELVKDLASIFKTRIELRQIGVRDEAKMLGGIGP
CGRMLCCSTFLGDFEPVSIKMAKDQNLSLNPTKISGLCGRLMCCLKYENDEYETAKEQLPDLGEMITTANGPAKVVGLNI
LERVLQVELKNREKVIEYTWEELLEEGVVSAQTTD

Nucleotide


Download         Length: 828 bp        

>NTDB_id=555754 LT978_RS19715 WP_004264723.1 3939224..3940051(-) (yaaT) [Bacillus amyloliquefaciens strain TL106]
TTGTACAACGTAATAGGCGTCCGCTTTAAAAAAGCGGGGAAAATTTATTATTTTGATCCGAACGGATTTGATATAGAACA
AGACAGCTGCGTCATTGTTGAAACCGTAAGAGGTGTAGAATACGGGCAGGTTGTCATCGCAAATAAACAAGTGGACGAGC
ATGATGTTGTGCTTCCGCTTCGAAAGGTTATTCGCGTTGCTGATGAACGCGATCTTCTCATTGTAGAAGAAAACAAACAG
GAGGCCCTGTCCGCTTTTGAAGTCTGTCAGAAAAAAGTGGCTGACCACGGCTTAGATATGAAGCTGGTTGATGTTGAATT
TACGTTTGACCGCAATAAAGTCATTTTTTACTTTACGGCAGACGGACGGGTTGATTTCAGGGAATTGGTCAAAGACTTGG
CTTCTATCTTTAAAACGAGAATCGAATTGCGCCAAATCGGGGTAAGGGACGAGGCGAAAATGCTCGGCGGTATCGGACCA
TGCGGGAGAATGCTTTGCTGCTCCACGTTCCTCGGTGATTTTGAACCGGTGTCCATCAAAATGGCGAAGGATCAAAATTT
ATCGTTGAACCCAACGAAGATTTCCGGTCTGTGCGGCCGTTTGATGTGCTGTTTGAAGTATGAAAATGATGAGTATGAGA
CGGCAAAAGAACAGCTGCCGGATTTAGGCGAAATGATTACGACGGCAAACGGCCCCGCAAAGGTTGTCGGTCTTAATATT
CTGGAACGGGTGCTTCAGGTGGAACTGAAGAATCGTGAAAAAGTGATAGAATATACTTGGGAAGAGCTCTTGGAAGAGGG
CGTCGTATCCGCACAAACCACAGATTAA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(62-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0F5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

96.727

100

0.967