Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   LT978_RS19605 Genome accession   NZ_CP090838
Coordinates   3921382..3921612 (-) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens strain TL106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3916382..3926612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS19595 (LT978_19590) spoVT 3917106..3917642 (-) 537 WP_004264646.1 stage V sporulation protein T -
  LT978_RS19600 (LT978_19595) mfd 3917779..3921312 (-) 3534 WP_015388787.1 transcription-repair coupling factor -
  LT978_RS19605 (LT978_19600) subA/fin 3921382..3921612 (-) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  LT978_RS19610 (LT978_19605) pth 3921674..3922240 (-) 567 WP_139890529.1 aminoacyl-tRNA hydrolase -
  LT978_RS19615 (LT978_19610) - 3922325..3922933 (-) 609 WP_139890528.1 50S ribosomal protein L25/general stress protein Ctc -
  LT978_RS19620 (LT978_19615) - 3923018..3923971 (-) 954 WP_004264656.1 ribose-phosphate diphosphokinase -
  LT978_RS19625 (LT978_19620) glmU 3923993..3925363 (-) 1371 WP_139890527.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  LT978_RS19630 (LT978_19625) spoVG 3925555..3925848 (-) 294 WP_004264660.1 septation regulator SpoVG -
  LT978_RS19635 (LT978_19630) ridA 3926044..3926424 (-) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=555752 LT978_RS19605 WP_004264650.1 3921382..3921612(-) (subA/fin) [Bacillus amyloliquefaciens strain TL106]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=555752 LT978_RS19605 WP_004264650.1 3921382..3921612(-) (subA/fin) [Bacillus amyloliquefaciens strain TL106]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCGACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAACGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868