Detailed information NTG0555747

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: LT978_RS18395
• Genome accession: NZ_CP090838
• Coordinates: 3704756..3705877 (-)
• Length: 373 a.a.
• NCBI ID: WP_003156660.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain TL106
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3699756..3710877

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LT978_RS18370 (LT978_18365)	-	3699910..3700869 (-)	960	WP_003156656.1	metal ABC transporter substrate-binding protein	-
LT978_RS18375 (LT978_18370)	-	3701074..3701619 (+)	546	WP_139890352.1	PadR family transcriptional regulator	-
LT978_RS18380 (LT978_18375)	-	3701620..3702114 (+)	495	WP_139890353.1	DUF4188 domain-containing protein	-
LT978_RS18385 (LT978_18380)	-	3702099..3703778 (-)	1680	WP_139890354.1	alpha-glucosidase	-
LT978_RS18390 (LT978_18385)	-	3703861..3704640 (-)	780	WP_014304287.1	glucose 1-dehydrogenase	-
LT978_RS18395 (LT978_18390)	rapF	3704756..3705877 (-)	1122	WP_003156660.1	tetratricopeptide repeat protein	Regulator
LT978_RS18400 (LT978_18395)	-	3705987..3706490 (+)	504	WP_072588311.1	M15 family metallopeptidase	-
LT978_RS18405 (LT978_18400)	-	3706487..3707845 (-)	1359	WP_139890355.1	YcdB/YcdC domain-containing protein	-
LT978_RS18410 (LT978_18405)	-	3708046..3709446 (-)	1401	WP_139890356.1	YcdB/YcdC domain-containing protein	-
LT978_RS18415 (LT978_18410)	-	3709575..3710570 (+)	996	WP_014304282.1	DUF5105 domain-containing protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.58 Da
• Isoelectric Point: 5.1691

>NTDB_id=555747 LT978_RS18395 WP_003156660.1 3704756..3705877(-) (rapF) [Bacillus amyloliquefaciens strain TL106]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=555747 LT978_RS18395 WP_003156660.1 3704756..3705877(-) (rapF) [Bacillus amyloliquefaciens strain TL106]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAAAATCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTAGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGAGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACAAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATCCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402