Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   LT978_RS17700 Genome accession   NZ_CP090838
Coordinates   3549423..3549857 (-) Length   144 a.a.
NCBI ID   WP_003156263.1    Uniprot ID   A0A9P1JEY0
Organism   Bacillus amyloliquefaciens strain TL106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3544423..3554857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS17685 (LT978_17680) - 3545026..3545874 (-) 849 WP_043866841.1 diguanylate cyclase -
  LT978_RS17690 (LT978_17685) - 3545855..3546940 (-) 1086 WP_014304364.1 hypothetical protein -
  LT978_RS17695 (LT978_17690) - 3547173..3549359 (-) 2187 WP_003156261.1 DNA topoisomerase III -
  LT978_RS17700 (LT978_17695) lrpC 3549423..3549857 (-) 435 WP_003156263.1 Lrp/AsnC family transcriptional regulator Machinery gene
  LT978_RS17705 (LT978_17700) - 3550034..3550324 (+) 291 WP_003156265.1 DUF3817 domain-containing protein -
  LT978_RS17710 (LT978_17705) - 3550362..3551171 (-) 810 WP_014304362.1 lipid II flippase Amj family protein -
  LT978_RS17715 (LT978_17710) - 3551670..3552092 (-) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  LT978_RS17720 (LT978_17715) - 3552099..3552722 (-) 624 WP_014304361.1 GNAT family protein -
  LT978_RS17725 (LT978_17720) - 3552810..3553313 (-) 504 WP_014304360.1 D-lyxose/D-mannose family sugar isomerase -
  LT978_RS17730 (LT978_17725) - 3553326..3554186 (-) 861 WP_139890328.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16474.10 Da        Isoelectric Point: 8.6776

>NTDB_id=555735 LT978_RS17700 WP_003156263.1 3549423..3549857(-) (lrpC) [Bacillus amyloliquefaciens strain TL106]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKINADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=555735 LT978_RS17700 WP_003156263.1 3549423..3549857(-) (lrpC) [Bacillus amyloliquefaciens strain TL106]
ATGAAACTAGATAATGTGGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAGCTGGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCGTTATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTCCCCGTCTCCTGCATTGTCGAAGCGACGGTGAAAAACGGAAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGGGCGGCGTGTTATATGCTGAAGAT
TAACGCGGACAGTCTGGAAACGATCGAACACTTCATCAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JEY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

81.56

97.917

0.799