Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   LT978_RS17600 Genome accession   NZ_CP090838
Coordinates   3528360..3529490 (-) Length   376 a.a.
NCBI ID   WP_014304380.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3523360..3534490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS17575 (LT978_17570) - 3524148..3525425 (+) 1278 WP_088037511.1 Nramp family divalent metal transporter -
  LT978_RS17580 (LT978_17575) - 3525532..3525798 (+) 267 WP_003156241.1 hypothetical protein -
  LT978_RS17585 (LT978_17580) - 3525805..3526596 (+) 792 WP_247738082.1 hypothetical protein -
  LT978_RS17590 (LT978_17585) - 3526693..3527250 (+) 558 WP_052587157.1 hypothetical protein -
  LT978_RS17595 (LT978_17590) - 3527635..3527865 (+) 231 WP_052587152.1 hypothetical protein -
  LT978_RS20125 - 3528226..3528360 (-) 135 WP_254922222.1 hypothetical protein -
  LT978_RS17600 (LT978_17595) rapC 3528360..3529490 (-) 1131 WP_014304380.1 Rap family tetratricopeptide repeat protein Regulator
  LT978_RS17605 (LT978_17600) - 3529626..3529829 (-) 204 WP_228767510.1 DUF2651 family protein -
  LT978_RS17610 (LT978_17605) - 3529905..3531038 (-) 1134 WP_025853743.1 hypothetical protein -
  LT978_RS17615 (LT978_17610) - 3531101..3531868 (-) 768 WP_079890911.1 septation ring formation regulator EzrA -
  LT978_RS20130 - 3532285..3532708 (-) 424 Protein_3472 peptidoglycan-binding protein -
  LT978_RS17625 (LT978_17620) - 3532856..3533110 (-) 255 Protein_3473 phage terminase small subunit-related protein -
  LT978_RS17630 (LT978_17625) - 3533159..3533422 (-) 264 WP_058906726.1 hypothetical protein -
  LT978_RS17635 (LT978_17630) - 3533548..3534114 (-) 567 WP_247738081.1 DUF4145 domain-containing protein -
  LT978_RS17640 (LT978_17635) - 3534216..3534377 (-) 162 WP_014304372.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44712.10 Da        Isoelectric Point: 5.2992

>NTDB_id=555734 LT978_RS17600 WP_014304380.1 3528360..3529490(-) (rapC) [Bacillus amyloliquefaciens strain TL106]
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAISYYRKAERELNAVSDEMEQAEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKSQLYKVKVIGCNMMVGANMYDMYRLTEAESYYREALSIARGLDEEKVKRIIGVIFHNLGLVYLRGKNLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCDKAKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETEVK
QSLGYLEEKRLWSDFAELTEKLGDFHFEKRNYAEGRNFLKKTIHAQTQILKVTEAI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=555734 LT978_RS17600 WP_014304380.1 3528360..3529490(-) (rapC) [Bacillus amyloliquefaciens strain TL106]
GTGGACCAAGTTTTACCGTCGTCCCAAGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGCCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAAGTAGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTCTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATAGAGATCGCCCTACAGTCGAC
GAACTGCTTGAAAAAATAGAAAAACCACAAAAAAGACTTACAGGCCTCTTGAAATATTACTCATTGTTTTTTCGTGGAAT
GTATGAATTTGATCATAAAGAGTATGTTGAAGCGATAAGCTATTATCGCAAAGCAGAGAGAGAGTTGAATGCTGTATCAG
ATGAAATGGAGCAAGCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTAAAAAAAGCCAAGCAATTGTTTGAAAAAAGTCAACTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTCGG
TGCTAACATGTACGATATGTACAGGCTGACGGAGGCAGAATCATATTATCGGGAAGCATTAAGTATCGCCCGTGGCTTGG
ATGAGGAAAAAGTGAAAAGAATTATCGGAGTGATCTTTCATAACTTAGGCTTAGTTTATTTAAGAGGGAAAAATTTGATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGAGTGAGATCATTATATAT
GATGGCGAATGTCCTGTACCAATGTGATAAAGCCAAGGAAGCACGTTTCTTTTATGAAACGGCTTTAAATCGTGCTCGGA
CTTCTAATGAAGAGGAATATTTGGCTAAATTAAAAATCATTAATTCATTGTACGAAGAATATAATGAAACAGAAGTGAAA
CAAAGCTTAGGTTACTTGGAAGAGAAACGCCTTTGGTCTGATTTCGCAGAGCTAACCGAAAAATTAGGTGACTTTCATTT
TGAGAAGAGAAACTATGCAGAGGGAAGAAACTTTTTAAAGAAAACCATACATGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATAA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(145-296)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

37.534

99.202

0.372