Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   LT978_RS15345 Genome accession   NZ_CP090838
Coordinates   3136332..3137048 (-) Length   238 a.a.
NCBI ID   WP_014304613.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3131332..3142048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS15330 (LT978_15325) - 3133600..3134739 (+) 1140 WP_003155584.1 YibE/F family protein -
  LT978_RS15335 (LT978_15330) - 3134736..3135497 (+) 762 WP_003155586.1 YibE/F family protein -
  LT978_RS15340 (LT978_15335) - 3135533..3136198 (-) 666 WP_003155588.1 NAD(P)H-dependent oxidoreductase -
  LT978_RS15345 (LT978_15340) treR 3136332..3137048 (-) 717 WP_014304613.1 trehalose operon repressor Regulator
  LT978_RS15350 (LT978_15345) treC 3137072..3138757 (-) 1686 WP_052587300.1 alpha,alpha-phosphotrehalase -
  LT978_RS15355 (LT978_15350) treP 3138833..3140248 (-) 1416 WP_003155593.1 PTS system trehalose-specific EIIBC component -
  LT978_RS15360 (LT978_15355) - 3140520..3140780 (+) 261 WP_007408496.1 spore germination protein -
  LT978_RS15365 (LT978_15360) - 3140795..3141037 (+) 243 WP_003155595.1 spore germination protein -
  LT978_RS15370 (LT978_15365) - 3141053..3141484 (+) 432 WP_014304610.1 Hsp20/alpha crystallin family protein -
  LT978_RS15375 (LT978_15370) - 3141494..3141871 (-) 378 WP_003155597.1 DUF1992 domain-containing protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27482.53 Da        Isoelectric Point: 7.3803

>NTDB_id=555730 LT978_RS15345 WP_014304613.1 3136332..3137048(-) (treR) [Bacillus amyloliquefaciens strain TL106]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTEVHRLGLILPPSEAAKELGTVADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=555730 LT978_RS15345 WP_014304613.1 3136332..3137048(-) (treR) [Bacillus amyloliquefaciens strain TL106]
ATGAAAGTGAATAAATATATCACAATCTATAAAGATATGGTGCGGCAGATTGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTATGCGATCAATACGGCACATCACGAGAAACCGTCCGTAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGCTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGCGAACGGAGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGTGGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACATGTGCCTCTATTAACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
GGAAGACCGGAAGTATTTGGATCTCGGCGGGTTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.373

99.16

0.42