Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   LT978_RS12980 Genome accession   NZ_CP090838
Coordinates   2690980..2692116 (-) Length   378 a.a.
NCBI ID   WP_087920760.1    Uniprot ID   A7Z3N2
Organism   Bacillus amyloliquefaciens strain TL106     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2685980..2697116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS12935 (LT978_12930) - 2686210..2687037 (-) 828 WP_060657684.1 hypothetical protein -
  LT978_RS12940 (LT978_12935) - 2687027..2687206 (-) 180 WP_003154869.1 hypothetical protein -
  LT978_RS12945 (LT978_12940) xre 2687398..2687736 (+) 339 WP_003154871.1 HTH-type transcriptional regulator Xre -
  LT978_RS12950 (LT978_12945) - 2687885..2688475 (+) 591 WP_003154873.1 ImmA/IrrE family metallo-endopeptidase -
  LT978_RS12955 (LT978_12950) - 2688491..2688640 (-) 150 WP_162918038.1 hypothetical protein -
  LT978_RS12960 (LT978_12955) - 2688630..2689235 (-) 606 WP_003154876.1 poly-gamma-glutamate hydrolase family protein -
  LT978_RS12965 (LT978_12960) - 2689345..2689722 (+) 378 WP_139890288.1 PH domain-containing protein -
  LT978_RS12970 (LT978_12965) - 2689760..2690713 (-) 954 WP_139890289.1 N-acetylmuramoyl-L-alanine amidase -
  LT978_RS12975 (LT978_12970) - 2690856..2690990 (-) 135 WP_003154881.1 PhrA family phosphatase inhibitor -
  LT978_RS12980 (LT978_12975) rapC 2690980..2692116 (-) 1137 WP_087920760.1 Rap family tetratricopeptide repeat protein Regulator
  LT978_RS12985 (LT978_12980) - 2692322..2692789 (+) 468 WP_139890290.1 DinB family protein -
  LT978_RS12990 (LT978_12985) - 2692938..2693702 (+) 765 WP_003154887.1 sulfite exporter TauE/SafE family protein -
  LT978_RS12995 (LT978_12990) - 2693749..2696634 (-) 2886 WP_069448679.1 type 2 lanthipeptide synthetase LanM family protein -
  LT978_RS13000 (LT978_12995) - 2696723..2696899 (-) 177 WP_017417596.1 class II lanthipeptide, LchA2/BrtA2 family -
  LT978_RS13005 (LT978_13000) - 2696936..2697112 (-) 177 WP_017417595.1 class II lanthipeptide, LchA2/BrtA2 family -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45073.28 Da        Isoelectric Point: 4.9159

>NTDB_id=555704 LT978_RS12980 WP_087920760.1 2690980..2692116(-) (rapC) [Bacillus amyloliquefaciens strain TL106]
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICRSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKEMDNASVR
HTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=555704 LT978_RS12980 WP_087920760.1 2690980..2692116(-) (rapC) [Bacillus amyloliquefaciens strain TL106]
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTATACCCATATCCGGCAGTTTCA
CGTCCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATTGAGGATATGGAAGAAGATCAGGATCTGCTGCTGT
ATTATTCATTAATGGAATTCAGACACCGCGTCATGCTGGATTACATCAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTACTTTAATTTTTTTCG
AGGAATGTACGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTTGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAACCTGAAACAAACCTACGTCTCC
ATGAGTTATGCCGTTCAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCCCGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCCGAATATTTTGAGACATCCGTTTCCATTTGCAGGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACTACAGCCGAAGCAGAGAAGCAATATCGCCTCGGGCTCAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTCAATCTGTTCCAATTTTTGCATGCGTTATACGGCAAGGAAATGGATAACGCATCCGTCAGG
CACACGTTTGATTTTCTGGAAGAACACATGCTGTATCCGTATGTGGAAGAATTGGCGCATGACGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCGCTCACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z3N2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.415

99.471

0.442
  rapF Bacillus subtilis subsp. subtilis str. 168

42.48

100

0.426