Detailed information NTG0555701

Bioinformatically predicted

Overview

• Name: clpE
• Type: Regulator
• Locus tag: LT978_RS12350
• Genome accession: NZ_CP090838
• Coordinates: 2578550..2580646 (+)
• Length: 698 a.a.
• NCBI ID: WP_014304900.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain TL106
• Function: repress competence development (at the early growth phase) (predicted from homology) Competence regulation

Genomic Context

Location: 2573550..2585646

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LT978_RS12325 (LT978_12320)	queE	2573818..2574549 (-)	732	WP_014304903.1	7-carboxy-7-deazaguanine synthase QueE	-
LT978_RS12330 (LT978_12325)	queD	2574542..2574982 (-)	441	WP_015388312.1	6-carboxytetrahydropterin synthase QueD	-
LT978_RS12335 (LT978_12330)	queC	2574983..2575642 (-)	660	WP_003154679.1	7-cyano-7-deazaguanine synthase QueC	-
LT978_RS12340 (LT978_12335)	-	2575892..2577013 (-)	1122	WP_046559545.1	hypothetical protein	-
LT978_RS12345 (LT978_12340)	-	2577111..2578148 (-)	1038	WP_046559544.1	membrane protein	-
LT978_RS12350 (LT978_12345)	clpE	2578550..2580646 (+)	2097	WP_014304900.1	ATP-dependent protease ATP-binding subunit ClpE	Regulator
LT978_RS12355 (LT978_12350)	motA	2580816..2581631 (+)	816	WP_003154684.1	flagellar motor stator protein MotA	-
LT978_RS12360 (LT978_12355)	motB	2581603..2582388 (+)	786	WP_003154685.1	flagellar motor protein MotB	-
LT978_RS12365 (LT978_12360)	-	2582424..2582870 (-)	447	WP_003154686.1	MarR family transcriptional regulator	-
LT978_RS12370 (LT978_12365)	-	2583069..2584586 (+)	1518	WP_046559543.1	ATP-binding protein	-
LT978_RS12375 (LT978_12370)	-	2584797..2585057 (-)	261	WP_003154690.1	aspartyl-phosphate phosphatase Spo0E family protein	-

Sequence

Protein

• Length: 698 a.a.
• Molecular weight: 77785.84 Da
• Isoelectric Point: 5.2991

>NTDB_id=555701 LT978_RS12350 WP_014304900.1 2578550..2580646(+) (clpE) [Bacillus amyloliquefaciens strain TL106]
MRCQHCQKNEATIRLNMQVNSIQKQFVLCETCYTELTRKPSMSMGPQSFGFPFEQGFAPNQNKQQAGPEKGLLDELAQNV
TNGAKAGLIDPVIGRDNEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIAEGDVPNKLKNKELYLLDVASLVAN
TGIRGQFEERMKQLMNELKERKNVILFIDEIHLLVGAGSAEGSMDAGNILKPALARGELQVIGATTLKEYRQIEKDAALE
RRFQPVMVHEPTIEQAISILEGIKDKYEKYHGVTFSNEAINACVTLSSRYIQDRHLPDKAIDLLDEAGSKANLELDTVNE
EDAAERLKAIDAEKTKALREENYELAAKLRDEEAALEKQLAHETPASSPEIGAEHIQAIIEQKTGIPVGKLQADEQVKMK
ELEEHLHQRVIGQEKAVKKVAKAVRRSRAGLKSKNRPVGSFLFVGPTGVGKTELSKTLADELFGTKDSIIRLDMSEYMEK
HAVSKIIGSPPGYVGHDEAGQLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVLIMTSNA
GTGEKQVKVGFQSEESVMEEQTLIDSLSAFFKPEFLNRFDSIIEFQSLKKEHLVKIVSLLLTELEDTLKERGISLSVTDD
AKEKIAEIGYHPAFGARPLRRTIQELIEDEMTDLLLDDNEIKAFHVVMEEDGIKVRAQ

Nucleotide

• Length: 2097 bp

>NTDB_id=555701 LT978_RS12350 WP_014304900.1 2578550..2580646(+) (clpE) [Bacillus amyloliquefaciens strain TL106]
ATGCGTTGTCAACATTGTCAGAAAAACGAGGCGACGATTCGCCTGAACATGCAAGTCAATTCCATTCAAAAACAATTCGT
TTTATGTGAAACATGTTATACAGAATTAACCCGAAAACCGTCTATGAGCATGGGGCCGCAATCATTCGGATTCCCGTTTG
AGCAAGGTTTCGCTCCCAATCAAAATAAACAGCAGGCCGGCCCTGAAAAAGGCCTGCTTGACGAGCTCGCTCAAAACGTC
ACAAACGGCGCAAAAGCAGGTCTGATTGACCCTGTGATCGGCCGCGATAATGAAGTGGCGCGCGTAATTGAAATTTTGAA
CCGCCGGAATAAAAACAATCCGGTGCTGATCGGTGAGCCGGGCGTCGGTAAAACGGCTATTGCAGAAGGCCTCGCGCTTA
AAATCGCTGAAGGCGATGTGCCGAACAAATTGAAAAACAAAGAGCTTTACCTGCTTGACGTCGCTTCTCTCGTCGCCAAT
ACAGGGATCAGAGGCCAGTTTGAAGAAAGAATGAAACAATTAATGAACGAATTAAAAGAACGGAAAAATGTCATCTTGTT
CATTGATGAGATTCACCTTCTTGTAGGCGCCGGCTCTGCCGAGGGATCAATGGATGCCGGGAACATCCTGAAACCGGCGC
TTGCCAGAGGCGAGCTGCAGGTCATCGGGGCGACAACGCTGAAAGAGTACCGCCAGATTGAAAAAGATGCGGCGCTTGAA
AGACGCTTCCAGCCTGTCATGGTTCACGAGCCTACAATAGAACAAGCCATCAGCATTCTGGAAGGCATTAAAGATAAATA
CGAGAAATACCACGGCGTCACATTCAGCAATGAAGCGATAAACGCCTGTGTTACGCTTTCATCCCGTTACATTCAGGACC
GCCACCTGCCGGATAAAGCGATCGACTTATTAGATGAAGCCGGCTCTAAGGCGAACCTGGAACTTGATACCGTAAATGAA
GAAGATGCGGCTGAGAGACTCAAAGCAATTGACGCGGAGAAAACAAAAGCGCTTCGGGAAGAAAATTATGAGCTTGCCGC
GAAACTGCGTGATGAAGAAGCGGCTTTGGAAAAGCAGCTGGCGCATGAAACACCGGCCTCTTCACCTGAAATCGGCGCGG
AGCATATTCAAGCCATCATTGAACAGAAAACAGGCATTCCGGTCGGAAAACTCCAGGCTGATGAACAAGTCAAAATGAAG
GAACTTGAAGAGCATCTTCATCAGCGTGTCATCGGTCAGGAAAAAGCCGTGAAAAAAGTGGCGAAAGCGGTCAGACGAAG
CCGCGCCGGTTTAAAATCCAAAAACAGACCTGTCGGCTCCTTCCTCTTTGTCGGACCGACCGGAGTCGGAAAAACCGAGT
TATCAAAGACACTCGCAGATGAACTGTTCGGTACAAAAGATTCCATTATCCGTCTCGATATGAGTGAATACATGGAAAAA
CACGCCGTATCAAAAATTATCGGTTCACCGCCGGGATATGTCGGACACGATGAAGCCGGTCAATTAACGGAAAAAGTGCG
CCGCAATCCGTACAGCATCGTGCTGCTCGATGAGATTGAAAAAGCCCACCCTGATGTCCAGCATATGTTTCTGCAGATTA
TGGAGGACGGCCGTCTGACAGACAGCCAGGGCAGAACGGTCAGCTTTAAAGATACCGTTTTGATTATGACAAGCAACGCT
GGAACCGGCGAAAAACAGGTGAAAGTCGGATTCCAATCTGAAGAGAGCGTCATGGAAGAACAAACGCTGATTGATTCACT
GAGCGCGTTCTTCAAACCGGAGTTTTTAAACCGGTTTGACAGCATTATTGAATTCCAATCCCTGAAAAAAGAACATCTCG
TGAAAATCGTCAGCCTGCTTCTCACAGAGCTTGAAGACACATTAAAAGAGCGCGGCATCAGCCTGAGCGTCACCGATGAT
GCGAAGGAAAAAATCGCTGAAATCGGCTACCACCCCGCTTTCGGAGCACGCCCGCTCAGAAGAACCATCCAAGAATTGAT
CGAGGACGAAATGACAGATCTCTTATTGGATGACAACGAAATCAAAGCCTTCCATGTCGTAATGGAAGAGGACGGCATCA
AAGTCCGGGCACAATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (608-679)

• AAA domain (Cdc48 subfamily) (AAA_2) (436-602)

• ATPase family associated with various cellular activities (AAA) (AAA) (115-246)

• AAA lid domain (AAA_lid_9) (252-351)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpE	Streptococcus mutans UA159	57.007	100	0.6
clpC	Lactococcus lactis subsp. cremoris KW2	56.676	100	0.596
clpE	Streptococcus pneumoniae Rx1	56.267	100	0.592
clpE	Streptococcus pneumoniae R6	56.267	100	0.592
clpE	Streptococcus pneumoniae D39	56.267	100	0.592
clpE	Streptococcus pneumoniae TIGR4	56.267	100	0.592
clpC	Bacillus subtilis subsp. subtilis str. 168	54.232	91.404	0.496
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	46.677	90.544	0.423
clpC	Streptococcus thermophilus LMD-9	44.154	93.123	0.411
clpC	Streptococcus thermophilus LMG 18311	43.846	93.123	0.408
clpC	Streptococcus pneumoniae TIGR4	45.88	88.682	0.407
clpC	Streptococcus pneumoniae Rx1	45.88	88.682	0.407
clpC	Streptococcus pneumoniae D39	45.88	88.682	0.407
clpC	Streptococcus mutans UA159	44.553	88.109	0.393