Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HALHA_RS00795 Genome accession   NC_019978
Coordinates   163697..165067 (+) Length   456 a.a.
NCBI ID   WP_015325897.1    Uniprot ID   L0K715
Organism   Halobacteroides halobius DSM 5150     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 158697..170067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HALHA_RS00775 (Halha_0151) - 159115..159576 (+) 462 WP_015325893.1 CtsR family transcriptional regulator -
  HALHA_RS00780 (Halha_0152) - 159578..160096 (+) 519 WP_015325894.1 UvrB/UvrC motif-containing protein -
  HALHA_RS00785 (Halha_0153) - 160098..161132 (+) 1035 WP_015325895.1 protein arginine kinase -
  HALHA_RS00790 (Halha_0154) - 161134..163569 (+) 2436 WP_015325896.1 ATP-dependent Clp protease ATP-binding subunit -
  HALHA_RS00795 (Halha_0155) radA 163697..165067 (+) 1371 WP_015325897.1 DNA repair protein RadA Machinery gene
  HALHA_RS00800 (Halha_0156) disA 165068..166168 (+) 1101 WP_015325898.1 DNA integrity scanning diadenylate cyclase DisA -
  HALHA_RS00805 (Halha_0157) - 166240..166737 (+) 498 WP_015325899.1 CarD family transcriptional regulator -
  HALHA_RS00810 (Halha_0158) - 166830..167939 (+) 1110 WP_015325900.1 PIN/TRAM domain-containing protein -
  HALHA_RS00815 (Halha_0159) ispD 167960..168652 (+) 693 WP_015325901.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  HALHA_RS00820 (Halha_0160) ispF 168649..169125 (+) 477 WP_015325902.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  HALHA_RS00825 (Halha_0161) - 169130..169900 (+) 771 WP_015325903.1 HutP family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49964.26 Da        Isoelectric Point: 5.5595

>NTDB_id=55570 HALHA_RS00795 WP_015325897.1 163697..165067(+) (radA) [Halobacteroides halobius DSM 5150]
MPKQKKRYICQECGYQALKWSGQCPGCDSWNTLVEEIINPKQEKKEQQVTANVNLETIDKIETKVEDRLTSNFQELDRVL
GGGIVPGSLILIGGDPGIGKSTLLLQASYNISEEYDKVMYVTGEESRRQVKLRANRLEAISSSLYILAETNLLSVINSIK
ELNPDLVVIDSIQTIHNPNLDSAPGSVSQVRDATNRLMKLAKKDGIPVFVVGHVTKQGSIAGPKVLEHMVDTVLYFEGDR
HRDYRILRAVKNRFGSTNEVGIFEMQQSGLEEVLNPSQAFIAERPEGVSGSVIIPCLEGSRPILIELQALASSANFGTPS
RMTTGIDHKRVSLILAVLEKRLGLHLQNQDVYINIVGGFQVDEPAIDLGMAIAIVSSFRDVSVSEKLAVIGEVGLSGEVR
AISQIEKRVKEASKLGFSQFIIPKSNLQGLSSAYQDLTINGVANVREVLDLILGGE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=55570 HALHA_RS00795 WP_015325897.1 163697..165067(+) (radA) [Halobacteroides halobius DSM 5150]
ATGCCAAAACAGAAGAAGAGATATATTTGTCAAGAATGTGGTTATCAAGCTTTAAAATGGAGTGGACAATGTCCAGGTTG
TGATAGTTGGAATACATTAGTAGAGGAAATTATTAATCCTAAACAAGAAAAGAAAGAACAACAGGTTACTGCTAATGTAA
ATCTTGAAACAATTGATAAGATTGAAACTAAGGTAGAAGATAGGTTAACATCTAATTTCCAAGAATTAGATCGAGTATTA
GGGGGAGGTATAGTACCTGGGTCTTTAATTTTAATTGGTGGCGATCCAGGAATAGGGAAGTCTACCTTATTATTACAGGC
TTCTTATAATATAAGTGAAGAATATGATAAAGTAATGTATGTTACAGGGGAGGAATCAAGGCGTCAAGTTAAACTACGTG
CTAACAGATTAGAGGCAATTAGTTCTAGTTTATATATATTAGCAGAAACTAATTTATTATCTGTTATTAATAGTATTAAG
GAGTTAAACCCTGATTTGGTAGTTATTGATTCAATTCAAACTATACATAATCCTAATTTAGATTCAGCACCGGGAAGTGT
TAGCCAAGTTAGAGATGCTACTAATCGATTAATGAAATTAGCTAAGAAAGATGGAATTCCTGTTTTTGTAGTAGGACATG
TAACTAAGCAAGGTTCTATTGCAGGGCCAAAGGTCTTAGAACATATGGTTGATACTGTTTTATATTTTGAGGGAGACCGA
CATCGAGATTATAGGATATTAAGAGCAGTTAAAAATAGATTTGGTTCTACAAATGAGGTTGGAATTTTTGAGATGCAGCA
ATCAGGATTAGAAGAAGTGTTAAATCCTTCTCAAGCTTTTATAGCTGAAAGACCTGAAGGAGTTTCTGGTTCTGTGATTA
TTCCTTGTTTAGAGGGAAGTCGCCCGATCTTAATTGAGCTCCAAGCTTTAGCATCTTCAGCTAATTTTGGTACACCTAGT
CGAATGACTACTGGGATAGATCATAAACGAGTATCATTGATCTTAGCTGTATTAGAGAAAAGGTTGGGTTTGCATTTGCA
AAATCAGGATGTCTACATTAATATTGTAGGTGGGTTTCAAGTAGATGAGCCAGCTATTGATTTAGGAATGGCTATAGCTA
TTGTATCTAGCTTTAGAGATGTATCTGTTTCAGAGAAATTAGCAGTGATTGGTGAAGTAGGATTATCTGGAGAAGTAAGG
GCGATTAGTCAGATTGAAAAGCGGGTAAAAGAGGCTAGTAAGTTAGGTTTTAGTCAATTTATTATTCCTAAGAGTAACCT
ACAAGGACTTTCTTCTGCTTATCAAGATTTAACTATAAATGGTGTTGCTAATGTTAGAGAAGTTTTAGATCTTATTTTAG
GAGGTGAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(340-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L0K715

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

57.267

100

0.579
  radA Streptococcus mitis NCTC 12261

51.747

100

0.52
  radA Streptococcus mitis SK321

51.747

100

0.52
  radA Streptococcus pneumoniae Rx1

51.747

100

0.52
  radA Streptococcus pneumoniae D39

51.747

100

0.52
  radA Streptococcus pneumoniae R6

51.747

100

0.52
  radA Streptococcus pneumoniae TIGR4

51.747

100

0.52

Multiple sequence alignment