Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   SMUNUM_RS08635 Genome accession   NZ_AP014571
Coordinates   1748194..1750209 (-) Length   671 a.a.
NCBI ID   WP_002284243.1    Uniprot ID   -
Organism   Streptococcus mutans LP13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1743194..1755209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS08610 (SMNUM_1631) - 1744083..1744619 (+) 537 WP_002263470.1 biotin transporter BioY -
  SMUNUM_RS08615 (SMNUM_1632) - 1744717..1745166 (+) 450 WP_002263469.1 universal stress protein -
  SMUNUM_RS08620 (SMNUM_1633) - 1745444..1746829 (-) 1386 WP_002268948.1 Cof-type HAD-IIB family hydrolase -
  SMUNUM_RS08625 (SMNUM_1634) - 1746902..1747861 (+) 960 WP_002264939.1 asparaginase -
  SMUNUM_RS08630 - 1747887..1748051 (+) 165 WP_002271772.1 hypothetical protein -
  SMUNUM_RS08635 (SMNUM_1635) recG/mmsA 1748194..1750209 (-) 2016 WP_002284243.1 ATP-dependent DNA helicase RecG Machinery gene
  SMUNUM_RS08640 (SMNUM_1636) alr 1750382..1751497 (-) 1116 WP_002279912.1 alanine racemase -
  SMUNUM_RS08645 (SMNUM_1637) acpS 1751494..1751853 (-) 360 WP_002263463.1 holo-ACP synthase -
  SMUNUM_RS08650 (SMNUM_1638) - 1752123..1753157 (-) 1035 WP_168747862.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75319.16 Da        Isoelectric Point: 7.6470

>NTDB_id=55570 SMUNUM_RS08635 WP_002284243.1 1748194..1750209(-) (recG/mmsA) [Streptococcus mutans LP13]
MDLQSSLAVLKGLGPKSAEKFHRLGIYTIEDLLLYYPFRYEDFKAKSVLDLLDGEKAVVTGKVVTPANVQYYGFKRNRLS
FKIKQDEAVIAVSFFNQPYLQDKVELDQDIAIFGKWDQKKSALTGMKILTQVTDDMQPVYHVAQGISQSALIKAIQSAFE
AGYLRFLSENLPQVLLNKYRLLDRQTATRAMHFPKDLEEYKQALRRIKFEELFYFQLNLQVLKANNKSESNGLLITYDHD
QVAAKIAALPFALTNAQKRSLDEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYAAYSAGLQSALMVPTEILAEQHYES
LRTLFPELSIALLTSGMKAAVRRSALAAIADGSVDMIVGTHALIQEGVDYHKLGLVITDEQHRFGVKQRRLFREKGENPD
VLMMTATPIPRTLAITAFGEMDVSLIDELPAGRKPIVTRWVKHEQLDKVLPWVKEQLKKKEQVYVISPLIEESETLDLKN
AVALEEDLKAYFASSANIALMHGRMKNDEKEAIMQAFKKGSIDILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLR
GRVGRGEKQSYAILVANPKTDTGKNRMRIMTKTTDGFVLAEEDLKMRGSGEIFGVRQSGIPEFQVADIVEDYPILEEARK
VASQIVAVKDWCQDKQWAILVQNLKQKEILD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=55570 SMUNUM_RS08635 WP_002284243.1 1748194..1750209(-) (recG/mmsA) [Streptococcus mutans LP13]
ATGGACTTACAGTCATCACTTGCGGTTTTAAAGGGATTAGGTCCTAAGTCTGCAGAAAAATTTCATAGATTAGGCATTTA
TACCATTGAGGATTTGTTGCTTTACTATCCTTTTCGTTATGAGGATTTTAAGGCAAAATCTGTTTTAGATTTGTTAGATG
GTGAAAAAGCTGTTGTTACTGGAAAAGTAGTGACACCAGCTAATGTACAATATTATGGGTTTAAACGCAATCGTCTATCT
TTTAAAATAAAACAAGATGAAGCTGTTATTGCTGTTTCTTTTTTTAATCAGCCTTATTTACAAGATAAGGTGGAGCTTGA
TCAGGATATTGCTATTTTTGGAAAATGGGATCAAAAGAAGTCAGCTCTTACGGGCATGAAGATTTTGACTCAAGTGACAG
ATGATATGCAGCCTGTTTATCATGTGGCACAAGGAATATCACAGTCAGCTCTGATTAAGGCTATTCAATCCGCTTTTGAA
GCTGGTTATTTACGCTTTTTATCTGAAAATTTACCGCAGGTTTTGCTTAATAAATATCGTTTGTTAGACAGACAAACAGC
TACGCGGGCTATGCATTTTCCGAAAGATTTGGAAGAATATAAACAAGCCTTGCGCCGCATCAAATTTGAGGAACTCTTTT
ATTTTCAACTCAATTTGCAGGTTCTTAAAGCAAATAATAAATCAGAATCAAATGGTCTGCTTATTACTTATGATCACGAT
CAAGTGGCTGCTAAAATAGCTGCTCTGCCTTTTGCCTTGACGAATGCCCAAAAAAGGAGCTTAGACGAAATTCTGGCAGA
TATGAAGTCTGGCGCTCATATGAATCGGCTTTTACAGGGAGATGTCGGTTCTGGTAAGACAGTCATTGCCAGTCTTGCTA
TGTATGCAGCCTATAGTGCAGGTCTGCAGTCTGCTTTGATGGTTCCTACGGAAATTTTAGCGGAACAACATTATGAAAGT
TTAAGGACTTTATTTCCTGAACTTTCAATTGCACTTTTGACGTCTGGAATGAAGGCTGCTGTAAGACGTTCAGCCTTAGC
AGCTATCGCTGATGGCTCAGTAGATATGATTGTTGGTACCCACGCTCTCATTCAAGAAGGTGTTGATTACCATAAATTAG
GCTTAGTTATTACGGATGAACAACATCGATTTGGTGTTAAGCAAAGGCGACTGTTTAGGGAAAAGGGAGAGAATCCTGAT
GTTCTCATGATGACAGCCACACCTATTCCTAGAACCTTGGCTATTACTGCCTTTGGCGAAATGGATGTTTCTCTTATTGA
TGAATTGCCAGCAGGTCGCAAACCGATTGTTACACGTTGGGTTAAGCATGAACAGTTAGATAAAGTTCTGCCTTGGGTTA
AAGAACAGCTCAAGAAAAAAGAACAAGTCTATGTCATTTCACCTTTGATTGAAGAGTCTGAAACCTTGGATTTGAAAAAT
GCTGTCGCTTTAGAAGAAGACTTAAAAGCTTATTTTGCGTCGTCTGCTAATATTGCTCTTATGCATGGTCGTATGAAAAA
TGATGAAAAAGAAGCCATTATGCAGGCTTTCAAAAAGGGCAGTATTGATATTCTGGTTTCAACAACTGTCATTGAAGTTG
GGGTCAATGTACCTAATGCTACGATTATGATTATTATGGATGCCGATCGTTTTGGTCTTAGTCAATTGCATCAATTACGA
GGACGTGTAGGACGTGGAGAAAAGCAATCCTATGCCATTTTAGTTGCTAATCCTAAAACGGATACTGGGAAAAATCGCAT
GCGCATTATGACAAAAACAACAGATGGCTTTGTTTTGGCTGAAGAAGATTTAAAAATGCGTGGTTCAGGAGAAATTTTTG
GTGTTCGTCAATCTGGCATTCCTGAATTTCAGGTGGCTGATATTGTGGAAGATTACCCTATTTTAGAAGAGGCTAGAAAA
GTGGCTAGTCAAATTGTGGCCGTTAAAGATTGGTGTCAAGATAAACAATGGGCAATTCTTGTGCAAAATCTTAAGCAAAA
AGAAATTTTGGATTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(450-566)

RecG wedge domain (RecG_wedge)

(10-157)

DEAD/DEAH box helicase (DEAD)

(254-409)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-666)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

69.598

100

0.696
  recG/mmsA Streptococcus pneumoniae R36A

69.598

100

0.696
  recG Bacillus subtilis subsp. subtilis str. 168

49.629

100

0.498
  recG Neisseria meningitidis strain C311

39.663

97.317

0.386

Multiple sequence alignment