Detailed information NTG0555690

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: LT978_RS11210
• Genome accession: NZ_CP090838
• Coordinates: 2306889..2307878 (-)
• Length: 329 a.a.
• NCBI ID: WP_003154301.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain TL106
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2301889..2312878

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LT978_RS11175 (LT978_11170)	rimM	2302598..2303122 (-)	525	WP_003154290.1	ribosome maturation factor RimM	-
LT978_RS11180 (LT978_11175)	-	2303127..2303513 (-)	387	WP_003154291.1	YlqD family protein	-
LT978_RS11185 (LT978_11180)	-	2303604..2303849 (-)	246	WP_007611392.1	KH domain-containing protein	-
LT978_RS11190 (LT978_11185)	rpsP	2303849..2304121 (-)	273	WP_003154296.1	30S ribosomal protein S16	-
LT978_RS11195 (LT978_11190)	ffh	2304227..2305567 (-)	1341	WP_003154298.1	signal recognition particle protein	-
LT978_RS11200 (LT978_11195)	-	2305581..2305913 (-)	333	WP_003154299.1	putative DNA-binding protein	-
LT978_RS11205 (LT978_11200)	-	2306035..2306805 (-)	771	WP_025851293.1	aminoglycoside phosphotransferase family protein	-
LT978_RS11210 (LT978_11205)	pilA	2306889..2307878 (-)	990	WP_003154301.1	signal recognition particle-docking protein FtsY	Machinery gene
LT978_RS11215 (LT978_11210)	smc	2307898..2311458 (-)	3561	WP_069013486.1	chromosome segregation protein SMC	-
LT978_RS11220 (LT978_11215)	rncS	2311560..2312309 (-)	750	WP_003154303.1	ribonuclease III	-
LT978_RS11225 (LT978_11220)	acpP	2312448..2312681 (-)	234	WP_003154310.1	acyl carrier protein	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 36096.28 Da
• Isoelectric Point: 5.0098

>NTDB_id=555690 LT978_RS11210 WP_003154301.1 2306889..2307878(-) (pilA) [Bacillus amyloliquefaciens strain TL106]
MSFFKKLKEKITKQTDSVSEKFKDGLEKTRNSFSNKVNELVSRYRKVDEDFFEELEEVLIGADVGFTTVMELIDELKKEV
KLKNIQDPQEVQSVISEKLVDIYNSGDEQISELNIQDGRLNVILLVGVNGVGKTTTIGKLAHKLKNEGKSVVLAAGDTFR
AGAIEQLEVWGERTGVPVIKQAAGSDPAAVIYDAVHAAKARGADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPH
EVLLALDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVDDLQRFDAESYVYGLF
SDLVEKAED

Nucleotide

• Length: 990 bp

>NTDB_id=555690 LT978_RS11210 WP_003154301.1 2306889..2307878(-) (pilA) [Bacillus amyloliquefaciens strain TL106]
ATGAGCTTTTTTAAAAAATTAAAAGAGAAAATCACGAAACAGACAGACTCCGTCTCTGAAAAATTTAAAGATGGTCTTGA
AAAAACAAGAAATTCCTTCTCAAATAAAGTGAACGAACTCGTCTCCCGCTACCGGAAAGTCGACGAGGATTTCTTCGAGG
AGCTTGAGGAAGTGCTGATTGGCGCTGACGTAGGTTTTACAACCGTCATGGAGCTGATTGATGAGCTCAAAAAAGAAGTG
AAGCTGAAAAACATTCAGGATCCTCAGGAAGTGCAGTCCGTCATTTCTGAAAAGCTTGTCGACATTTATAACAGCGGCGA
CGAACAGATTTCTGAATTAAATATTCAGGACGGGCGCCTGAACGTTATTCTGCTTGTCGGGGTAAACGGCGTCGGAAAAA
CGACAACGATCGGAAAACTTGCCCATAAGCTGAAGAATGAAGGCAAATCCGTTGTGCTCGCTGCCGGAGACACTTTCAGA
GCCGGGGCGATTGAACAGCTTGAAGTGTGGGGGGAGCGTACAGGCGTGCCTGTCATTAAGCAGGCTGCCGGAAGCGACCC
TGCTGCGGTTATTTATGATGCCGTACACGCGGCTAAAGCAAGAGGAGCGGATGTGCTGATTTGTGATACGGCCGGCCGCC
TTCAGAATAAAGTTAACTTAATGAAAGAGCTTGAAAAGGTCAAACGCGTCATCGAACGCGAAGTGCCTGAGGCCCCGCAT
GAGGTTCTCCTTGCGCTGGACGCGACGACAGGCCAGAATGCGATGGCGCAGGCGAAAGAATTCTCCAAAGCGACGAATGT
GACGGGTATCGCATTAACGAAGCTTGACGGCACCGCAAAAGGCGGTATCGTCCTGGCGATCCGCAATGAGCTTCACATCC
CTGTGAAACTGGTCGGCCTCGGAGAAAAGGTTGACGATCTCCAGCGGTTTGATGCAGAATCTTACGTATACGGTCTCTTT
TCGGATTTAGTTGAAAAAGCCGAAGATTAA

Domains

Predicted by InterProScan.

• SRP54-type protein, GTPase domain (SRP54) (121-320)

• SRP54-type protein, helical bundle domain (SRP54_N) (33-99)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	45.333	91.185	0.413