Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LT978_RS11130 Genome accession   NZ_CP090838
Coordinates   2294326..2295225 (-) Length   299 a.a.
NCBI ID   WP_003154279.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2289326..2300225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS11115 (LT978_11110) xerC 2289710..2290627 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  LT978_RS11120 (LT978_11115) trmFO 2290697..2292004 (-) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LT978_RS11125 (LT978_11120) topA 2292069..2294144 (-) 2076 WP_003154274.1 type I DNA topoisomerase -
  LT978_RS11130 (LT978_11125) dprA 2294326..2295225 (-) 900 WP_003154279.1 DNA-processing protein DprA Machinery gene
  LT978_RS11135 (LT978_11130) sucD 2295290..2296192 (-) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  LT978_RS11140 (LT978_11135) sucC 2296221..2297378 (-) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  LT978_RS11145 (LT978_11140) - 2297553..2297834 (-) 282 WP_003154284.1 FlhB-like flagellar biosynthesis protein -
  LT978_RS11150 (LT978_11145) - 2297831..2299534 (-) 1704 WP_139890251.1 glycosyl transferase -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32844.89 Da        Isoelectric Point: 7.8285

>NTDB_id=555689 LT978_RS11130 WP_003154279.1 2294326..2295225(-) (dprA) [Bacillus amyloliquefaciens strain TL106]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFFSDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=555689 LT978_RS11130 WP_003154279.1 2294326..2295225(-) (dprA) [Bacillus amyloliquefaciens strain TL106]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTTTCGGATCCGCATCCATTAACTGTTTTATCAGAGGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGTTACCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGTTTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.234

100

0.702
  dprA Lactococcus lactis subsp. cremoris KW2

40.502

93.311

0.378