Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   LT978_RS08475 Genome accession   NZ_CP090838
Coordinates   1680648..1682138 (+) Length   496 a.a.
NCBI ID   WP_014305324.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1675648..1687138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS08455 (LT978_08450) serA 1676302..1677879 (-) 1578 WP_003153401.1 phosphoglycerate dehydrogenase -
  LT978_RS08460 (LT978_08455) - 1678368..1678940 (+) 573 WP_003153402.1 ECF transporter S component -
  LT978_RS08465 (LT978_08460) - 1679080..1679328 (-) 249 WP_003153403.1 ferredoxin -
  LT978_RS08470 (LT978_08465) - 1679597..1680655 (+) 1059 WP_014305325.1 helix-turn-helix domain-containing protein -
  LT978_RS08475 (LT978_08470) recS 1680648..1682138 (+) 1491 WP_014305324.1 ATP-dependent DNA helicase RecQ Machinery gene
  LT978_RS08480 (LT978_08475) - 1682153..1682740 (+) 588 WP_014305323.1 CPBP family intramembrane glutamic endopeptidase -
  LT978_RS08485 (LT978_08480) - 1682718..1683488 (+) 771 WP_109567745.1 LysM peptidoglycan-binding domain-containing protein -
  LT978_RS08490 (LT978_08485) - 1683557..1684015 (+) 459 WP_007409443.1 YpbF family protein -
  LT978_RS08495 (LT978_08490) - 1684102..1684890 (+) 789 WP_003153411.1 metallophosphoesterase -
  LT978_RS08500 (LT978_08495) - 1685042..1685626 (+) 585 WP_003153412.1 genetic competence negative regulator -
  LT978_RS08505 (LT978_08500) gudB 1685787..1687061 (+) 1275 WP_003153413.1 NAD-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56057.12 Da        Isoelectric Point: 6.3781

>NTDB_id=555672 LT978_RS08475 WP_014305324.1 1680648..1682138(+) (recS) [Bacillus amyloliquefaciens strain TL106]
MTELHKALSRYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNAEKINRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILAVIRDAGTDDERKLRDVLINKGVQETQARTAVHLYLQGKTT
KEQLQEELTYRVEKKLRKMNRFSALLERKECIRKALLSYFDESYEPEGQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=555672 LT978_RS08475 WP_014305324.1 1680648..1682138(+) (recS) [Bacillus amyloliquefaciens strain TL106]
ATGACTGAGCTGCATAAAGCTTTATCCAGATATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAG
CGTGCTCCAAAAAAAGGATACGATCGCCATGCTTCCGACCGGCGGGGGGAAATCATTATGCTATCAGCTCCCGGGTTACA
TGATGGACGGGCTGGTGCTGATTATTTCACCGCTTCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCAAAAGGA
GAAAAGCGGGTTGCGGCATTAAACAGCATGCTGAATTCCGCAGAGCGGCATTTTATTCTCAGCAACATCAGCCGGTATAA
ATTTCTCTATATGTCTCCTGAAGCCCTTTCTTCACCTTATGTACTGAACCGTTTGAAAAACGTTCCGGTCAGTTTATTTG
TTATTGATGAGGCTCATTGCATATCGGAATGGGGACATGATTTCAGGCCTGATTATTCGAAGCTCGGGCCTTTCAGACAG
GCACTCGGAAAGCCGCCTGTATTGGCGCTGACTGCAACAGCGACAAAAGAAACGCTCAGAGACGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGTCATCTTTATTCAGTCAACCGGCCGAATATTCTCCTGGCGGCAGAACATTTGGCTGATAATG
CCGAAAAAATAAACAGGCTCACGGAGCTTGCCGAAAAGCTTGAAGGCCCCGGTATCATATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCTGAGCTGAATGAAAAAACGGGAAAGCGGACGGATTATTATCACGGCGGAATGGATACAGGGGA
CAGAATCTTGATCCAGCAGCAATTTATCCATAATCAGCTTGATTGCATCTGCTGTACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCAGATATCCGCTTTGTCATTCACTTTTATCCTCCCCAAACGGCTGAGGCCTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGCCTGTCTGATTATGATCTGGAAGGCATTTTGGCCGTCATACGGGATGCCGGTACGGATGATGAGCGAAAGCTTC
GGGACGTTCTGATCAATAAAGGCGTCCAGGAAACACAGGCGCGAACGGCCGTCCATCTGTATCTGCAAGGAAAAACCACA
AAAGAGCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAAGAAGCTGCGTAAAATGAACCGTTTTTCGGCGTTATTAGA
GCGGAAAGAATGTATAAGAAAAGCGCTGCTGTCTTATTTTGATGAATCGTATGAGCCTGAAGGCCAAACCGGACAATGCT
GCAGCAGCTGCGGACTTGATCTGGCTCCGTACGAGCAAAAAGGAGAACGGAAAAACATGGAACGGTTTGAAGATTGGAAG
CTGGAATTAGGCCGGATTTTCGGTTCAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-178)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

68.548

100

0.685