Detailed information
Bioinformatically predicted
Overview
| Name | epdL | Type | Machinery gene |
| Locus tag | METHO_RS14095 | Genome accession | NC_019977 |
| Coordinates | 1051304..1051633 (-) | Length | 109 a.a. |
| NCBI ID | WP_052309357.1 | Uniprot ID | - |
| Organism | Methanomethylovorans hollandica DSM 15978 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1046304..1056633
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| METHO_RS05050 (Metho_1048) | - | 1047072..1047473 (-) | 402 | WP_015324451.1 | hypothetical protein | - |
| METHO_RS05055 (Metho_1049) | - | 1047659..1048309 (+) | 651 | WP_156811038.1 | CDP-alcohol phosphatidyltransferase family protein | - |
| METHO_RS05060 (Metho_1050) | purS | 1048372..1048620 (+) | 249 | WP_015324453.1 | phosphoribosylformylglycinamidine synthase subunit PurS | - |
| METHO_RS05065 (Metho_1051) | purQ | 1048620..1049318 (+) | 699 | WP_015324454.1 | phosphoribosylformylglycinamidine synthase subunit PurQ | - |
| METHO_RS05070 (Metho_1052) | rnhB | 1049321..1049971 (-) | 651 | WP_015324455.1 | ribonuclease HII | - |
| METHO_RS05075 (Metho_1053) | - | 1050012..1050944 (-) | 933 | WP_015324456.1 | type II secretion system F family protein | - |
| METHO_RS14090 | - | 1050931..1051389 (-) | 459 | Protein_1022 | type II/IV secretion system ATPase subunit | - |
| METHO_RS14095 | epdL | 1051304..1051633 (-) | 330 | WP_052309357.1 | type II/IV secretion system ATPase subunit | Machinery gene |
| METHO_RS14100 (Metho_1055) | - | 1051614..1052246 (-) | 633 | WP_015324457.1 | hypothetical protein | - |
| METHO_RS05085 (Metho_1056) | pheT | 1052701..1054317 (+) | 1617 | WP_015324458.1 | phenylalanine--tRNA ligase subunit beta | - |
| METHO_RS05090 (Metho_1057) | - | 1054501..1054758 (-) | 258 | WP_015324459.1 | hypothetical protein | - |
| METHO_RS05095 (Metho_1058) | - | 1055086..1055370 (+) | 285 | WP_245546335.1 | nucleotidyltransferase family protein | - |
| METHO_RS05100 (Metho_1059) | - | 1055397..1055720 (+) | 324 | WP_245546366.1 | DUF86 domain-containing protein | - |
Sequence
Protein
Download Length: 109 a.a. Molecular weight: 12137.89 Da Isoelectric Point: 6.7477
>NTDB_id=55566 METHO_RS14095 WP_052309357.1 1051304..1051633(-) (epdL) [Methanomethylovorans hollandica DSM 15978]
MKKDSIEDVSGNGHDLPIFLYHRKHTNIATNIVFHEDELNSFIIQLAQRSGKHIYVAEPMVDAAMPEGSRIQMTLGTCVT
AHGSTFTIRKFSDVPITPCGPYQMGYVLS
MKKDSIEDVSGNGHDLPIFLYHRKHTNIATNIVFHEDELNSFIIQLAQRSGKHIYVAEPMVDAAMPEGSRIQMTLGTCVT
AHGSTFTIRKFSDVPITPCGPYQMGYVLS
Nucleotide
Download Length: 330 bp
>NTDB_id=55566 METHO_RS14095 WP_052309357.1 1051304..1051633(-) (epdL) [Methanomethylovorans hollandica DSM 15978]
TTGAAAAAAGATTCCATTGAAGATGTTTCAGGCAACGGGCACGATCTGCCTATATTCCTGTACCACCGAAAACACACTAA
CATTGCAACAAATATTGTTTTTCATGAAGATGAACTTAACTCTTTCATTATCCAGCTTGCCCAAAGAAGTGGAAAACATA
TATATGTGGCAGAACCAATGGTTGATGCCGCAATGCCCGAAGGGTCAAGGATACAGATGACCCTGGGCACATGTGTAACT
GCGCATGGCAGTACTTTTACCATACGTAAGTTCAGCGATGTTCCTATCACCCCCTGTGGACCTTATCAAATGGGGTACGT
TCTCAGCTGA
TTGAAAAAAGATTCCATTGAAGATGTTTCAGGCAACGGGCACGATCTGCCTATATTCCTGTACCACCGAAAACACACTAA
CATTGCAACAAATATTGTTTTTCATGAAGATGAACTTAACTCTTTCATTATCCAGCTTGCCCAAAGAAGTGGAAAACATA
TATATGTGGCAGAACCAATGGTTGATGCCGCAATGCCCGAAGGGTCAAGGATACAGATGACCCTGGGCACATGTGTAACT
GCGCATGGCAGTACTTTTACCATACGTAAGTTCAGCGATGTTCCTATCACCCCCTGTGGACCTTATCAAATGGGGTACGT
TCTCAGCTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| epdL | Methanoculleus thermophilus strain DSM 2373 |
60 |
87.156 |
0.523 |