Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J6320_RS23480 Genome accession   NZ_CP072782
Coordinates   3300044..3301153 (-) Length   369 a.a.
NCBI ID   WP_248487139.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HY9901     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3295044..3306153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6320_RS23450 (J6320_23335) hemF 3295503..3296420 (-) 918 WP_017821583.1 oxygen-dependent coproporphyrinogen oxidase -
  J6320_RS23455 (J6320_23340) - 3296468..3297025 (-) 558 WP_154204943.1 L-threonylcarbamoyladenylate synthase -
  J6320_RS23460 (J6320_23345) purE 3297225..3297710 (+) 486 WP_005379082.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  J6320_RS23465 (J6320_23350) - 3297715..3298849 (+) 1135 Protein_2880 5-(carboxyamino)imidazole ribonucleotide synthase -
  J6320_RS23470 (J6320_23355) - 3298916..3299485 (-) 570 WP_154204942.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  J6320_RS23475 (J6320_23360) - 3299562..3300041 (-) 480 WP_005379074.1 DUF494 family protein -
  J6320_RS23480 (J6320_23365) dprA 3300044..3301153 (-) 1110 WP_248487139.1 DNA-processing protein DprA Machinery gene
  J6320_RS23485 (J6320_23370) - 3301137..3302231 (-) 1095 WP_053350675.1 LysM peptidoglycan-binding domain-containing protein -
  J6320_RS23490 (J6320_23375) def 3302370..3302888 (+) 519 WP_005379068.1 peptide deformylase -
  J6320_RS23495 (J6320_23380) fmt 3302922..3303869 (+) 948 WP_005379066.1 methionyl-tRNA formyltransferase -
  J6320_RS23500 (J6320_23385) rsmB 3303950..3305233 (+) 1284 WP_086047108.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40000.78 Da        Isoelectric Point: 7.0083

>NTDB_id=555648 J6320_RS23480 WP_248487139.1 3300044..3301153(-) (dprA) [Vibrio alginolyticus strain HY9901]
MNRRNNDDLDAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPRYPPQLKQIVAPPPLLFVQGNPACLSLPQIAMVGSRNASIDGLQHARQFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLANIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNEEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=555648 J6320_RS23480 WP_248487139.1 3300044..3301153(-) (dprA) [Vibrio alginolyticus strain HY9901]
ATGAATCGACGAAATAACGATGATCTCGATGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCACGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGTTGGCTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGCGTTATCCACCTCAACTCAAACAAATCGTTGCGCCGCCACCTCTACTTTTTGTTCAAGG
AAACCCTGCTTGTCTTTCTCTGCCACAAATCGCGATGGTTGGCAGCCGAAATGCGAGTATTGATGGATTACAGCATGCAC
GTCAGTTCGCTGCAGAGTTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GATGGTGCGTTGCAAGCGGGTGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGCAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTACTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCAATGCTTGCGG
AGGAAACCAGTTGATACGTCATGGCGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGAAGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)

DprA winged helix domain (DprA_WH)

(316-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

82.385

100

0.824
  dprA Vibrio cholerae strain A1552

57.027

100

0.572
  dprA Glaesserella parasuis strain SC1401

47.011

99.729

0.469
  dprA Legionella pneumophila strain ERS1305867

44.598

97.832

0.436
  dprA Haemophilus influenzae Rd KW20

44.38

94.038

0.417
  dprA Neisseria meningitidis strain C311

36.616

100

0.393
  dprA Neisseria meningitidis MC58

36.616

100

0.393
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379