Detailed information NTG0555635

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J6320_RS20745
• Genome accession: NZ_CP072782
• Coordinates: 2737639..2738625 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain HY9901
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2732639..2743625

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J6320_RS20730 (J6320_20620)	recA	2733184..2734227 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
J6320_RS20735 (J6320_20625)	pncC	2734428..2734910 (-)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
J6320_RS20740 (J6320_20630)	mutS	2734995..2737556 (+)	2562	WP_154205038.1	DNA mismatch repair protein MutS	-
J6320_RS20745 (J6320_20635)	rpoS	2737639..2738625 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
J6320_RS20750 (J6320_20640)	nlpD	2738706..2739629 (-)	924	WP_154205037.1	murein hydrolase activator NlpD	-
J6320_RS20755 (J6320_20645)	-	2739643..2740269 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
J6320_RS20760 (J6320_20650)	surE	2740269..2741045 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
J6320_RS20765 (J6320_20655)	truD	2741045..2742088 (-)	1044	WP_248486984.1	tRNA pseudouridine(13) synthase TruD	-
J6320_RS20770 (J6320_20660)	ispF	2742134..2742610 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J6320_RS20775 (J6320_20665)	ispD	2742625..2743332 (-)	708	WP_154205035.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J6320_RS20780 (J6320_20670)	ftsB	2743334..2743615 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=555635 J6320_RS20745 WP_005380887.1 2737639..2738625(-) (rpoS) [Vibrio alginolyticus strain HY9901]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=555635 J6320_RS20745 WP_005380887.1 2737639..2738625(-) (rpoS) [Vibrio alginolyticus strain HY9901]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854