Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   J6320_RS15270 Genome accession   NZ_CP072782
Coordinates   1605099..1606625 (-) Length   508 a.a.
NCBI ID   WP_031777249.1    Uniprot ID   A0AA36UU54
Organism   Vibrio alginolyticus strain HY9901     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1600099..1611625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6320_RS15250 (J6320_15180) - 1600118..1601548 (-) 1431 WP_195723095.1 lipopolysaccharide biosynthesis protein -
  J6320_RS15255 (J6320_15185) - 1601541..1602713 (-) 1173 WP_005377641.1 glycosyltransferase -
  J6320_RS15260 (J6320_15190) - 1602725..1603909 (-) 1185 WP_213868761.1 glycosyltransferase -
  J6320_RS15265 (J6320_15195) - 1604054..1605124 (-) 1071 WP_154204602.1 glycosyltransferase family 4 protein -
  J6320_RS15270 (J6320_15200) luxO 1605099..1606625 (-) 1527 WP_031777249.1 sigma-54 dependent transcriptional regulator Regulator
  J6320_RS15275 (J6320_15205) - 1606934..1607314 (-) 381 WP_005377636.1 Hpt domain-containing protein -
  J6320_RS15280 (J6320_15210) - 1607326..1608012 (-) 687 WP_005377635.1 AAA family ATPase -
  J6320_RS15285 (J6320_15215) - 1608012..1610114 (-) 2103 WP_017820662.1 SLBB domain-containing protein -
  J6320_RS15290 (J6320_15220) - 1610111..1610977 (-) 867 WP_017820663.1 OmpA family protein -
  J6320_RS15295 (J6320_15225) - 1611004..1611324 (-) 321 WP_017634929.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56600.55 Da        Isoelectric Point: 5.9083

>NTDB_id=555624 J6320_RS15270 WP_031777249.1 1605099..1606625(-) (luxO) [Vibrio alginolyticus strain HY9901]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVSHLPAQLTKKSKVTKTTTPA
HVAQESANIAPITPPPVYTEELSPSAVEPSITAAELPGTPSSAATSPYFNSDGTIRPMWQVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=555624 J6320_RS15270 WP_031777249.1 1605099..1606625(-) (luxO) [Vibrio alginolyticus strain HY9901]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTGAAAGACGAACCTTA
TGACATTTTTCATGTCGAGACAGGTCGCGAAGCGATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGACATGTCTGGCGAAGACGTGTTGGATTGGATCAACCAGAATGACATTCCTACGTCCGTTATTATTGCT
ACGGCACACGGCAGCGTCGACTTAGCCGTTAATCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAGCCCATAAACGC
TGATCGCCTAAAAACATCAGTCGCATTGCACCTCAAACGCGCCAAATTGGAAGATTTGGTGGAAAATATTCAGTCCAAGT
TTGATCGCCACAACTATCACGGATTCATCGGTTCAAGCCTCCCGATGCAGGCGGTATACAAGACCATTGATGCTGTTGCG
CCAACTTCTGCCAGTGTGTTTATTGTGGGAGAAAGCGGCACAGGTAAAGAAGTTTGTGCTGAAGCCGTCCACCGCCAGAG
CGACCGTAAAGACAAGCCTTTTATTGCAATTAACTGTGGGGCTATTCCACGAGATTTGATGGAAAGTGAGATTTTTGGTC
ACGTTAAAGGGGCCTTTACTGGAGCAACAACAGATCGAAAAGGTGCGGCGACGCTGGCACATGGTGGCACGCTTTTTCTT
GATGAGCTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGCTTTCTACAAACGGGCACTTACACCCCTCTTGG
TGGCACTCGAGAAATGAAAGTGGATGTGAGAATCATTTGTGCCACCAACCGAGATCCATTAACAGAGGTAGAAGAAGGTC
GTTTTCGTGAAGACTTATACTACCGTGTGCACGTTATACCTATCGATATGCCCCCATTACGTGAACGAGGAAGTGACATC
GTCACGCTTGCCAAGCACTTCTTGACCACTTACGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGCGAAGCTCA
ACATATCATCAAGCATTACGAATGGCCGGGTAATGTAAGGCAACTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ACGACGAAAAAGTCACGGTGAGCCACCTACCCGCTCAACTTACTAAAAAGTCTAAAGTGACGAAAACAACGACGCCTGCG
CATGTTGCTCAAGAGTCAGCAAACATTGCACCAATCACACCACCACCTGTTTATACTGAGGAACTTTCACCTTCTGCGGT
CGAACCGTCGATTACCGCAGCGGAGCTGCCTGGTACACCGTCCTCTGCTGCTACCTCACCGTACTTTAACTCTGATGGAA
CCATTCGTCCTATGTGGCAAGTAGAGCGTGAAGCAATTCAAAACGCAATCGCGTACTGTGATGGCAACGTCCTCAACGCC
GCTGTCATGCTGGAGTTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCATGGGAAGCGGATGAAATTAATCTCGAACA
ATCTTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.047

0.484