Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   J6320_RS09265 Genome accession   NZ_CP072782
Coordinates   273371..274378 (-) Length   335 a.a.
NCBI ID   WP_005379543.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HY9901     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 268371..279378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6320_RS09245 (J6320_09200) - 269736..269897 (-) 162 WP_248487293.1 hypothetical protein -
  J6320_RS09250 (J6320_09205) hslU 270575..271906 (-) 1332 WP_047101881.1 HslU--HslV peptidase ATPase subunit -
  J6320_RS09255 (J6320_09210) hslV 271930..272481 (-) 552 WP_238843520.1 ATP-dependent protease subunit HslV -
  J6320_RS09260 (J6320_09215) ftsN 272597..273145 (-) 549 WP_017820300.1 cell division protein FtsN -
  J6320_RS09265 (J6320_09220) cytR 273371..274378 (-) 1008 WP_005379543.1 DNA-binding transcriptional regulator CytR Regulator
  J6320_RS09270 (J6320_09225) priA 274702..276906 (-) 2205 WP_053349704.1 primosomal protein N' -
  J6320_RS09275 (J6320_09230) rpmE 277203..277424 (+) 222 WP_005379546.1 50S ribosomal protein L31 -
  J6320_RS09280 (J6320_09235) tnpA 277599..278033 (+) 435 WP_154204313.1 IS200/IS605 family transposase -
  J6320_RS09285 (J6320_09240) rpsJ 278495..278806 (+) 312 WP_004410492.1 30S ribosomal protein S10 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36892.42 Da        Isoelectric Point: 6.2447

>NTDB_id=555613 J6320_RS09265 WP_005379543.1 273371..274378(-) (cytR) [Vibrio alginolyticus strain HY9901]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=555613 J6320_RS09265 WP_005379543.1 273371..274378(-) (cytR) [Vibrio alginolyticus strain HY9901]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
AGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGTTATCTAGTCCTGCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCTGAACTCGAGCTTCCGACAGTACATATTGATAAC
CTGACCTCTGCATTTGAAGCAGTGAATTACCTGACCCAATTAGGTCATAAACGCATTGCTCAAATCTCTGGACCAGATAC
AGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCAATAAAGATCCACAATATA
GTGTCATTACTGAGTTTTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCAGAACCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATCTCTCAACCTCGCTATG
AGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTCTGCTTGAA
ACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

98.204

99.701

0.979
  cytR Vibrio cholerae C6706

89.521

99.701

0.893