Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   J6320_RS03055 Genome accession   NZ_CP072781
Coordinates   723848..724945 (-) Length   365 a.a.
NCBI ID   WP_104980502.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HY9901     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 718848..729945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6320_RS03040 (J6320_03030) - 719427..720485 (-) 1059 WP_005385639.1 HlyD family secretion protein -
  J6320_RS03045 (J6320_03035) slyA 720521..720976 (-) 456 WP_017635177.1 transcriptional regulator SlyA -
  J6320_RS03050 (J6320_03040) luxQ 721272..723848 (-) 2577 WP_213962676.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  J6320_RS03055 (J6320_03045) luxP 723848..724945 (-) 1098 WP_104980502.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  J6320_RS03060 (J6320_03050) - 725276..725593 (-) 318 WP_005373593.1 GIY-YIG nuclease family protein -
  J6320_RS03065 (J6320_03055) - 725590..726240 (-) 651 WP_005373594.1 YceH family protein -
  J6320_RS03070 (J6320_03060) - 726406..726609 (-) 204 WP_031777159.1 hypothetical protein -
  J6320_RS03075 (J6320_03065) - 726851..727165 (+) 315 WP_005373603.1 DUF496 family protein -
  J6320_RS03080 (J6320_03070) - 727287..728624 (+) 1338 WP_005385628.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41617.07 Da        Isoelectric Point: 5.9503

>NTDB_id=555608 J6320_RS03055 WP_104980502.1 723848..724945(-) (luxP) [Vibrio alginolyticus strain HY9901]
MKKALVFSLISMAAFTPNVQATQVLNGYWAYQEFLDQFPQQKQLTSALAEVVRETPVPVAKDKKRPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEHHQPFLYVGFDHAEGSRELAVEFGKRFPKHSHYSVLYFSEGYISDIRGNTFINQVNRDNQFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGRDDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=555608 J6320_RS03055 WP_104980502.1 723848..724945(-) (luxP) [Vibrio alginolyticus strain HY9901]
ATGAAAAAAGCGTTAGTATTCTCCCTGATTTCAATGGCCGCTTTTACGCCGAATGTGCAGGCCACCCAAGTTCTTAATGG
GTATTGGGCATATCAAGAATTTTTAGACCAGTTTCCACAACAGAAGCAGCTAACTAGTGCGTTGGCTGAAGTGGTAAGAG
AAACCCCTGTACCCGTAGCAAAAGACAAAAAGCGTCCACTGAAAATTTCTGTTGTTTATCCAGGGCAGCAGATCTCTGAT
TATTGGATTCGAAACATCGATGCGTTTGAAAAACGCCTAGATAAGCTTGATATCGACTATCAACTAAATCAAGTGTTTAC
TCGTCCTAATGCAGATATAAAGCAGCAAAGTTTGTCTTTAATGGAGGCGCTGAAAAGCAACTCCGATTACTTGATCTTTA
CTCTAGATACCACAAGACATCGTAAGTTTGTTGAGCATGTCTTAGATTCAAAGAAAACCAAGTTAATTTTACAAAATATC
ACCACACCTGTTAGGGATTGGGAACATCATCAGCCGTTTCTTTATGTTGGTTTCGACCACGCAGAAGGAAGTCGTGAATT
GGCCGTTGAGTTTGGCAAGCGTTTCCCTAAACATAGCCACTATAGTGTTCTCTATTTCTCGGAGGGCTACATTAGTGACA
TCAGAGGCAACACTTTTATCAACCAAGTGAACCGCGATAACCAGTTTGAACTACAATCTGCTTACTACACCAAAGCAACA
AAGCAATCTGGGTATGAAGCGGCAAAAGCCAGTTTGGAGAAGTATCCGGACGTTGATTTCATTTACGCGTGTTCTACCGA
TGTAGCATTAGGTGCTGTTGACGCTCTTAAAGAGTTAGGTCGTGACGATGTAATGATCAATGGTTGGGGCGGCGGTTCAG
CAGAGTTAGAGGCGCTTTCTAAAGGGGAGTTAGACGTTACCGTTATGCGTATGAACGATGATACAGGTATTGCAATGGCT
GAGGCCATTAAGTGGGATTTAGAAGGAAAGCCAGTTCCCACCGTTTACTCTGGTGATTTTGAAGTCGTTACCAAATCGGA
CTCTCCAGAAAGAATTGAAGCATTAAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644