Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LZ559_RS23955 Genome accession   NZ_CP090837
Coordinates   5260161..5261138 (+) Length   325 a.a.
NCBI ID   WP_030815221.1    Uniprot ID   A0ABN8VDE9
Organism   Streptomyces sp. R527F     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5255161..5266138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ559_RS23935 (LZ559_23935) - 5255203..5256351 (+) 1149 WP_044371245.1 dipeptide ABC transporter ATP-binding protein -
  LZ559_RS23940 (LZ559_23940) - 5256516..5258150 (+) 1635 WP_234877215.1 ABC transporter substrate-binding protein -
  LZ559_RS23945 (LZ559_23945) - 5258254..5259177 (+) 924 WP_006127343.1 ABC transporter permease -
  LZ559_RS23950 (LZ559_23950) - 5259170..5260147 (+) 978 WP_030815220.1 ABC transporter permease -
  LZ559_RS23955 (LZ559_23955) amiE 5260161..5261138 (+) 978 WP_030815221.1 ABC transporter ATP-binding protein Regulator
  LZ559_RS23960 (LZ559_23960) - 5261128..5262348 (+) 1221 WP_234877216.1 dipeptide ABC transporter ATP-binding protein -
  LZ559_RS23965 (LZ559_23965) - 5262553..5263611 (+) 1059 WP_318280471.1 hypothetical protein -
  LZ559_RS23970 (LZ559_23970) - 5263642..5265768 (-) 2127 WP_234877217.1 prolyl oligopeptidase family serine peptidase -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 35895.78 Da        Isoelectric Point: 6.8368

>NTDB_id=555578 LZ559_RS23955 WP_030815221.1 5260161..5261138(+) (amiE) [Streptomyces sp. R527F]
MLLEVRDLYVEFHTREGVAKAVNGVNYSVAEGETLAVLGESGSGKSVTAQAVMGILDMPPGKIAGGEILFKDQDLLKLKA
DERRKIRGQEMAMIFQDALSSLNPVLTVGQQLAEMFVVHRGMSRKDAKAKAVELMDRVRIPAAKERVNQYPHQFSGGMRQ
RIMIAMAMALEPSLIIADEPTTALDVTVQAQVMDLLAELQRELNMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHE
IYKAPAHPYTKGLLQSIPRLDQKGRELYAIKGLPPNLTRIPPGCAFNPRCPMAQDVCRSDVPPLYEVDEQRRSACHFWKE
TLDAR

Nucleotide


Download         Length: 978 bp        

>NTDB_id=555578 LZ559_RS23955 WP_030815221.1 5260161..5261138(+) (amiE) [Streptomyces sp. R527F]
ATGTTGCTCGAAGTGCGCGACCTGTACGTGGAGTTCCACACCCGCGAAGGTGTCGCCAAGGCCGTCAACGGGGTCAACTA
CTCGGTGGCCGAGGGCGAGACGCTCGCCGTCCTCGGCGAGTCCGGCTCCGGCAAGTCCGTCACCGCCCAGGCCGTCATGG
GCATCCTCGACATGCCGCCCGGGAAGATCGCCGGCGGGGAGATCCTCTTCAAGGACCAGGACCTGCTGAAGCTCAAGGCG
GACGAGCGGCGCAAGATCCGCGGCCAGGAGATGGCCATGATCTTCCAGGACGCCCTGTCCTCGCTGAACCCGGTCCTCAC
CGTCGGCCAGCAGCTCGCCGAGATGTTCGTCGTGCACCGCGGCATGTCCCGCAAGGACGCCAAGGCCAAGGCCGTCGAAC
TGATGGACCGGGTCCGCATCCCCGCCGCGAAGGAACGCGTCAACCAGTACCCGCACCAGTTCTCCGGCGGGATGCGCCAG
CGCATCATGATCGCCATGGCGATGGCCCTCGAACCGTCCCTGATCATCGCCGACGAGCCCACCACGGCCCTCGACGTCAC
CGTCCAGGCCCAGGTCATGGACCTCCTCGCGGAACTCCAGCGCGAGCTGAACATGGGCCTCATCCTGATCACCCACGACC
TCGGCGTCGTCGCCGACGTCGCGGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTCGAGACCGCCCCCGTCCACGAG
ATCTACAAGGCCCCCGCCCACCCGTACACCAAGGGCCTCCTCCAGTCGATCCCGCGCCTGGACCAGAAGGGCCGGGAGCT
GTACGCGATCAAGGGCCTGCCGCCCAACCTCACCCGCATCCCGCCCGGCTGCGCCTTCAACCCCCGCTGCCCGATGGCCC
AGGACGTGTGCCGCAGCGATGTGCCGCCGCTCTACGAGGTCGACGAACAGCGCCGCAGCGCCTGCCACTTCTGGAAGGAG
ACGCTCGATGCACGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(23-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

48.447

99.077

0.48
  amiE Streptococcus thermophilus LMG 18311

46.729

98.769

0.462
  amiE Streptococcus thermophilus LMD-9

46.729

98.769

0.462
  oppD Streptococcus mutans UA159

46.815

96.615

0.452