Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LZ559_RS23930 Genome accession   NZ_CP090837
Coordinates   5254152..5255210 (+) Length   352 a.a.
NCBI ID   WP_030711353.1    Uniprot ID   A0ABM9H7S1
Organism   Streptomyces sp. R527F     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5249152..5260210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ559_RS23915 (LZ559_23915) - 5250514..5252133 (+) 1620 WP_030815211.1 ABC transporter substrate-binding protein -
  LZ559_RS23920 (LZ559_23920) - 5252262..5253191 (+) 930 WP_010063259.1 ABC transporter permease -
  LZ559_RS23925 (LZ559_23925) - 5253184..5254140 (+) 957 WP_030815213.1 ABC transporter permease -
  LZ559_RS23930 (LZ559_23930) amiE 5254152..5255210 (+) 1059 WP_030711353.1 ABC transporter ATP-binding protein Regulator
  LZ559_RS23935 (LZ559_23935) - 5255203..5256351 (+) 1149 WP_044371245.1 dipeptide ABC transporter ATP-binding protein -
  LZ559_RS23940 (LZ559_23940) - 5256516..5258150 (+) 1635 WP_234877215.1 ABC transporter substrate-binding protein -
  LZ559_RS23945 (LZ559_23945) - 5258254..5259177 (+) 924 WP_006127343.1 ABC transporter permease -
  LZ559_RS23950 (LZ559_23950) - 5259170..5260147 (+) 978 WP_030815220.1 ABC transporter permease -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38281.23 Da        Isoelectric Point: 6.5871

>NTDB_id=555577 LZ559_RS23930 WP_030711353.1 5254152..5255210(+) (amiE) [Streptomyces sp. R527F]
MTTIDKTAHVPAPRESVSGDGPLLDVRDLHVEFHTRDGVAKAVNGVNYTVSAGETLAVLGESGSGKSVTAQTIMGILDMP
PGKITQGEILFRGQDMLKMSNEERRKIRGRKIAMIFQDALSSLNPVLTVGYQLGEMFRVHQGLSRKDAKAKSIELMDQVK
IPAAAARISDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVGELYSRPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLTRIPAGCAFSPRCPKAQDICRT
EIPPLAPVTEQDGLELVGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=555577 LZ559_RS23930 WP_030711353.1 5254152..5255210(+) (amiE) [Streptomyces sp. R527F]
GTGACCACCATCGACAAGACGGCTCACGTCCCCGCACCGCGGGAGTCCGTGAGTGGCGACGGTCCACTGCTCGACGTCCG
TGACCTGCACGTGGAGTTCCACACCCGCGACGGTGTGGCCAAGGCGGTCAACGGTGTGAACTACACCGTCAGCGCCGGCG
AGACGCTCGCCGTGCTCGGCGAGTCGGGCTCCGGCAAGTCCGTGACCGCGCAGACCATCATGGGCATCCTCGACATGCCG
CCCGGGAAGATCACGCAGGGCGAGATCCTCTTCCGCGGCCAGGACATGCTGAAGATGTCCAACGAGGAGCGCCGGAAGAT
CCGTGGCCGCAAGATCGCGATGATCTTCCAGGACGCGCTGTCCTCGCTGAACCCGGTCCTCACCGTCGGCTACCAGCTCG
GCGAGATGTTCCGGGTGCACCAGGGTCTGTCCCGCAAGGACGCCAAGGCCAAGTCCATCGAGCTGATGGACCAGGTCAAG
ATCCCGGCGGCGGCGGCCCGCATCTCGGACTACCCGCACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCCAT
GGCGCTGGCCCTGGAGCCGGACCTGATCATCGCCGACGAGCCGACCACCGCGCTCGACGTGACGGTGCAGGCCCAGGTCA
TGGACCTGCTGGCCGAGCTGCAGCGCGAGTACAACATGGGTCTGATCCTGATCACCCACGACCTCGGCGTCGTCGCCGAC
GTCGCGGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTGGAGACGGCCCCGGTCGGCGAGCTGTACAGCCGCCCGGC
CCACCCGTACACCCGGGGTCTGCTCGACTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTCTACGCGATCAAGGGGC
TGCCGCCCAACCTGACGCGTATCCCCGCGGGCTGTGCCTTCAGCCCGCGCTGCCCCAAGGCACAGGACATCTGCCGTACC
GAGATTCCGCCGCTCGCCCCCGTGACCGAGCAGGACGGCCTCGAGCTGGTCGGCCGCGGCAGCGCGTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(44-202)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

50.809

87.784

0.446
  amiE Streptococcus thermophilus LMG 18311

50.162

87.784

0.44
  amiE Streptococcus thermophilus LMD-9

50.162

87.784

0.44
  oppD Streptococcus mutans UA159

48.052

87.5

0.42