Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   LZ559_RS17470 Genome accession   NZ_CP090837
Coordinates   3922350..3923480 (-) Length   376 a.a.
NCBI ID   WP_044368326.1    Uniprot ID   -
Organism   Streptomyces sp. R527F     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3917350..3928480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ559_RS17460 (LZ559_17460) gyrB 3919260..3921332 (-) 2073 WP_328284843.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LZ559_RS17465 (LZ559_17465) - 3921769..3922272 (-) 504 WP_030807139.1 DciA family protein -
  LZ559_RS17470 (LZ559_17470) recF 3922350..3923480 (-) 1131 WP_044368326.1 DNA replication/repair protein RecF Machinery gene
  LZ559_RS17475 (LZ559_17475) gnd 3923570..3924454 (-) 885 WP_234876927.1 decarboxylating 6-phosphogluconate dehydrogenase -
  LZ559_RS17480 (LZ559_17480) dnaN 3924616..3925746 (-) 1131 WP_003967886.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40851.49 Da        Isoelectric Point: 6.8621

>NTDB_id=555569 LZ559_RS17470 WP_044368326.1 3922350..3923480(-) (recF) [Streptomyces sp. R527F]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVTQGERS
QLVELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYGDVAPGGGPVALEYRSSVGDDVG
PERTRDELYEQLIAALAGVRKQEIERGVTLVGPHRDDLLLGLRGMPAKGYASHGESWSYALALRLASYELLRSEGNEPVL
VLDDVFAELDARRRERLAELVAPGEQVLVTAAVAEDVPGVLAGTRYAVTAGEVERV

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=555569 LZ559_RS17470 WP_044368326.1 3922350..3923480(-) (recF) [Streptomyces sp. R527F]
ATGCACGTCACGCATCTCTCGCTGGCCGACTTCCGTTCGTACGCCCGGGTCGAGGTCCCTCTCGACCCGGGCGTCACCGC
GTTCGTGGGGCCCAACGGGCAGGGCAAGACGAATCTCGTCGAGGCCGTCGGCTATCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCCCCGCTGGTGCGCATGGGCGCGGAGCGGGCGGTGATCCGGGCGGCGGTGACCCAGGGCGAGCGCTCG
CAGCTGGTCGAGCTGGAGCTGAACCCGGGCCGGGCGAACCGGGCCCGTATCAACAGGTCCTCGCAGGTCAGGCCGCGTGA
TGTGCTGGGGATCGTGCGGACCGTGCTGTTCGCCCCGGAGGACCTGGCGCTGGTCAAGGGCGATCCCGGCGAGCGGCGGC
GGTTCCTGGACGAGCTGGTCACCGCGCGTTCGCCCCGGATGGCCGGGGTCCGCTCCGACTACGAACGCGTGCTCAAGCAG
CGCAACACCCTGCTGAAGTCGGCGGCGATGGCCCGGCGGCACGGCGGCCGTTCGATGGATCTGTCCACCCTGGACGTCTG
GGACCAGCACCTGGGCCGGGTGGGCGCCGAGCTGCTCGCGCAGCGCCTCGATCTGATCGCCACGCTCCAGCCGCTGGCCG
ACAAGGCGTACGGGGACGTGGCGCCGGGCGGTGGTCCGGTGGCGCTGGAGTACCGCAGCTCGGTCGGCGATGACGTGGGT
CCCGAGCGCACCCGCGACGAGCTGTACGAGCAGCTGATCGCGGCGCTCGCGGGGGTCCGGAAGCAGGAGATCGAGCGGGG
CGTGACGCTGGTCGGCCCGCACCGCGACGATCTGCTGCTGGGGCTGCGCGGGATGCCGGCCAAGGGGTACGCGAGTCACG
GCGAGTCCTGGAGCTATGCGCTGGCGCTGCGTCTTGCCAGCTACGAACTGCTGCGCTCCGAGGGCAACGAGCCGGTGCTG
GTCCTGGACGATGTCTTCGCCGAGCTGGACGCCCGCCGCCGGGAGCGGCTGGCGGAGCTGGTGGCCCCCGGCGAGCAGGT
GCTGGTGACGGCCGCGGTCGCGGAGGATGTGCCGGGCGTGCTGGCGGGGACGCGGTACGCGGTGACCGCGGGCGAGGTGG
AGCGCGTATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.808

97.074

0.367