Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   J7U34_RS07210 Genome accession   NZ_CP072778
Coordinates   1389043..1389969 (-) Length   308 a.a.
NCBI ID   WP_002946409.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24748     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1384043..1394969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U34_RS07180 (J7U34_07120) - 1384120..1384914 (-) 795 WP_138496582.1 HAD-IIB family hydrolase -
  J7U34_RS07185 (J7U34_07125) - 1385099..1385476 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  J7U34_RS07190 (J7U34_07130) - 1385481..1386179 (+) 699 WP_014608540.1 ABC transporter ATP-binding protein -
  J7U34_RS07195 (J7U34_07135) - 1386191..1386976 (+) 786 WP_002951425.1 hypothetical protein -
  J7U34_RS07200 (J7U34_07140) amiF 1387026..1387955 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  J7U34_RS07205 (J7U34_07145) amiE 1387948..1389033 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  J7U34_RS07210 (J7U34_07150) amiD 1389043..1389969 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  J7U34_RS07215 (J7U34_07155) amiC 1389969..1391462 (-) 1494 WP_011227407.1 ABC transporter permease Regulator
  J7U34_RS07220 (J7U34_07160) amiA 1391524..1393491 (-) 1968 WP_372430036.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34694.85 Da        Isoelectric Point: 9.7054

>NTDB_id=555566 J7U34_RS07210 WP_002946409.1 1389043..1389969(-) (amiD) [Streptococcus thermophilus strain S24748]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=555566 J7U34_RS07210 WP_002946409.1 1389043..1389969(-) (amiD) [Streptococcus thermophilus strain S24748]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

100

100

1
  amiD Streptococcus thermophilus LMD-9

100

100

1
  amiD Streptococcus salivarius strain HSISS4

96.429

100

0.964