Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   LZ559_RS07100 Genome accession   NZ_CP090837
Coordinates   1544634..1546721 (+) Length   695 a.a.
NCBI ID   WP_030814127.1    Uniprot ID   A0ABM9H2G1
Organism   Streptomyces sp. R527F     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1539634..1551721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ559_RS07075 (LZ559_07075) - 1539810..1540577 (+) 768 WP_030814140.1 ABC transporter permease -
  LZ559_RS07080 (LZ559_07080) - 1540657..1541643 (+) 987 WP_044371047.1 COX15/CtaA family protein -
  LZ559_RS07085 (LZ559_07085) - 1541715..1542842 (-) 1128 WP_030814135.1 amidohydrolase family protein -
  LZ559_RS07090 (LZ559_07090) - 1542922..1543299 (-) 378 WP_073776408.1 hypothetical protein -
  LZ559_RS07095 (LZ559_07095) - 1543393..1544346 (-) 954 WP_030627489.1 heme o synthase -
  LZ559_RS07100 (LZ559_07100) recP/tkt 1544634..1546721 (+) 2088 WP_030814127.1 transketolase Machinery gene
  LZ559_RS07105 (LZ559_07105) tal 1546756..1547874 (+) 1119 WP_030814125.1 transaldolase -
  LZ559_RS07110 (LZ559_07110) zwf 1547880..1549412 (+) 1533 WP_010061287.1 glucose-6-phosphate dehydrogenase -
  LZ559_RS07115 (LZ559_07115) opcA 1549409..1550449 (+) 1041 WP_044371041.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  LZ559_RS07120 (LZ559_07120) pgl 1550446..1551228 (+) 783 WP_030814120.1 6-phosphogluconolactonase -

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 74700.51 Da        Isoelectric Point: 4.9131

>NTDB_id=555544 LZ559_RS07100 WP_030814127.1 1544634..1546721(+) (recP/tkt) [Streptomyces sp. R527F]
MSIKPTTTDLQWTDVDQRAVDTARVLAADAVQKVGNGHPGTAMSLAPAAYTLFQKVMRHDPADAEWTGRDRFVLSAGHSS
LTLYIQLYLAGYGLELDDLKAFRTWGSKTPGHPEYGHTTGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAAPGTSPF
DHMVWAIAGDGCLQEGISAEASSLAGHQKLGNLVLLWDDNHISIEGDTETAVSEDTIKRYEAYGWHVQRVDQLPSGDLDP
AGLYAALQAAKAETERPSFIAARSIIAWPAPNAQNTEAAHGSALGDDEVAATKRVLGFDPEQTFEVSDEVIGHTREALDR
GREARAEWDKSFAAWRTANPERAASFDRIAAGELPEGWEEKLPVFEPGKGLATRAASGKVLQALGEIVPELWGGSADLAG
SNNTTIDKTSSFLPAGNPLPEADPYGRTIHFGIREHAMAAAMNGIALHGNTRIYGGTFLVFSDYMRNAVRLSALMHLPVT
YVWTHDSIGLGEDGPTHQPVEHLASLRAIPGLNVVRPADANETAIAWREILRRYTKVFGKGTPHGLALTRQGVPTYEANE
DAAKGGYVLFEAEGGEPQVLLIATGSEVHVAVEAREQLQAAGVPTRVVSMPSVEWFEEQDQGYKDSVLPPSVKARVAVEA
GIGLTWYRYVGDAGRIVSLEHFGASADAKVLFREFGFTPEHVAAAARESLEAAAR

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=555544 LZ559_RS07100 WP_030814127.1 1544634..1546721(+) (recP/tkt) [Streptomyces sp. R527F]
GTGAGCATCAAGCCGACCACCACAGACCTCCAGTGGACCGATGTGGACCAGCGGGCCGTGGACACTGCCCGCGTCCTCGC
TGCGGACGCCGTACAGAAAGTCGGGAACGGCCACCCGGGCACGGCGATGAGCCTGGCTCCTGCCGCGTACACCCTGTTCC
AGAAGGTGATGCGGCACGACCCCGCGGACGCCGAGTGGACCGGTCGCGACCGGTTCGTCCTCTCCGCCGGCCACTCCAGC
CTGACGCTCTACATCCAGCTCTACCTGGCCGGCTACGGGCTGGAGCTGGACGACCTGAAGGCCTTCCGCACCTGGGGCTC
CAAGACCCCGGGCCACCCGGAGTACGGCCACACCACCGGTGTCGAGACGACGACGGGGCCGCTGGGCCAGGGTGTCGCCA
ACGCGGTGGGCATGGCGATGGCCGCCCGCTACGAGCGGGGCCTGTTCGACCCCGAGGCGGCCCCCGGCACCTCCCCGTTC
GACCACATGGTGTGGGCCATCGCCGGTGACGGCTGCCTCCAGGAGGGCATCTCGGCCGAGGCGTCCTCGCTGGCCGGGCA
CCAGAAGCTGGGCAACCTGGTCCTGCTCTGGGACGACAACCACATCTCCATCGAGGGCGACACGGAGACCGCGGTCTCCG
AGGACACCATCAAGCGGTACGAGGCGTACGGCTGGCACGTCCAGCGTGTCGACCAGCTGCCGAGCGGCGACCTGGACCCG
GCGGGTCTGTACGCGGCGCTGCAGGCGGCCAAGGCCGAGACCGAGCGCCCCTCGTTCATCGCGGCCCGCTCGATCATCGC
CTGGCCCGCCCCGAACGCGCAGAACACCGAGGCCGCGCACGGCTCGGCACTCGGCGACGACGAGGTCGCGGCGACCAAGC
GGGTCCTCGGCTTCGACCCGGAGCAGACCTTCGAGGTCTCCGACGAGGTCATCGGCCACACCCGCGAGGCCCTGGACCGC
GGCCGTGAGGCCCGCGCCGAGTGGGACAAGTCGTTCGCCGCGTGGCGCACGGCCAACCCGGAGCGCGCCGCCTCCTTCGA
CCGGATCGCCGCGGGCGAGCTGCCCGAGGGCTGGGAGGAGAAGCTCCCCGTCTTCGAGCCCGGCAAGGGTCTGGCCACCC
GTGCCGCCTCCGGCAAGGTGCTCCAGGCGCTCGGTGAGATCGTGCCCGAGCTGTGGGGCGGCTCCGCCGACCTCGCGGGC
TCGAACAACACGACGATCGACAAGACGTCGTCGTTCCTCCCGGCGGGCAACCCGCTGCCGGAGGCCGACCCGTACGGCCG
GACGATCCACTTCGGCATCCGCGAGCACGCGATGGCCGCCGCGATGAACGGCATCGCGCTGCACGGCAACACCCGCATCT
ACGGCGGCACCTTCCTGGTGTTCTCCGACTACATGCGCAACGCGGTGCGGCTCTCCGCGCTGATGCACCTGCCGGTGACG
TACGTGTGGACGCACGACTCGATCGGCCTCGGCGAGGACGGCCCGACGCACCAGCCGGTCGAGCACCTGGCCTCGCTGCG
CGCCATCCCGGGCCTGAACGTCGTGCGCCCGGCCGACGCCAACGAGACCGCCATCGCCTGGCGCGAGATCCTGCGCCGCT
ACACCAAGGTGTTCGGCAAGGGCACCCCGCACGGTCTGGCGCTGACCCGCCAGGGCGTGCCGACGTACGAGGCGAACGAG
GACGCGGCCAAGGGCGGTTACGTCCTGTTCGAGGCCGAGGGTGGCGAGCCGCAGGTGCTGCTCATCGCGACCGGTTCCGA
GGTCCACGTCGCCGTCGAGGCGCGCGAGCAGCTCCAGGCGGCCGGTGTGCCGACCCGGGTGGTCTCGATGCCGTCGGTCG
AGTGGTTCGAGGAGCAGGACCAGGGCTACAAGGACAGCGTGCTGCCGCCGTCGGTGAAGGCGCGCGTCGCCGTCGAGGCG
GGCATCGGCCTGACCTGGTACCGGTACGTGGGCGACGCGGGCCGGATCGTCTCGCTGGAGCACTTCGGGGCCTCCGCCGA
CGCGAAGGTGCTGTTCCGCGAGTTCGGCTTCACGCCGGAGCACGTGGCCGCCGCCGCGCGGGAATCTCTCGAAGCCGCAG
CACGCTGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-534)

Transketolase, C-terminal domain (Transketolase_C)

(576-682)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

44.741

97.122

0.435