Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   J7U34_RS02320 Genome accession   NZ_CP072778
Coordinates   426633..427076 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24748     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 421633..432076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U34_RS02305 (J7U34_02310) - 423039..424079 (-) 1041 WP_339328283.1 AAA family ATPase -
  J7U34_RS02310 (J7U34_02315) gdhA 424423..425775 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  J7U34_RS02315 (J7U34_02320) - 426033..426443 (+) 411 WP_011680804.1 peptide deformylase -
  J7U34_RS02320 (J7U34_02325) rcrR 426633..427076 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  J7U34_RS02325 (J7U34_02330) rcrP 427080..428894 (+) 1815 WP_138496668.1 ABC transporter ATP-binding protein Regulator
  J7U34_RS02330 (J7U34_02335) rcrQ 428884..430662 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  J7U34_RS02335 (J7U34_02340) - 430818..431189 (+) 372 WP_232981380.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=555544 J7U34_RS02320 WP_002945408.1 426633..427076(+) (rcrR) [Streptococcus thermophilus strain S24748]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=555544 J7U34_RS02320 WP_002945408.1 426633..427076(+) (rcrR) [Streptococcus thermophilus strain S24748]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537