Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   VPBB_RS20855 Genome accession   NC_019971
Coordinates   1264218..1265315 (-) Length   365 a.a.
NCBI ID   WP_015313428.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus BB22OP     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1259218..1270315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPBB_RS20840 (VPBB_A1118) - 1259882..1260937 (-) 1056 WP_015313427.1 HlyD family secretion protein -
  VPBB_RS20845 (VPBB_A1119) - 1260975..1261430 (-) 456 WP_005477342.1 MarR family transcriptional regulator -
  VPBB_RS20850 (VPBB_A1120) luxQ 1261642..1264218 (-) 2577 WP_005463469.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  VPBB_RS20855 (VPBB_A1121) luxP 1264218..1265315 (-) 1098 WP_015313428.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  VPBB_RS20860 (VPBB_A1122) - 1265666..1265986 (-) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  VPBB_RS20865 (VPBB_A1123) - 1265983..1266633 (-) 651 WP_015313429.1 YceH family protein -
  VPBB_RS20870 (VPBB_A1124) - 1266810..1267025 (-) 216 WP_015313430.1 hypothetical protein -
  VPBB_RS20875 (VPBB_A1126) - 1267353..1267667 (+) 315 WP_005453573.1 DUF496 family protein -
  VPBB_RS20880 (VPBB_A1127) - 1267790..1269127 (+) 1338 WP_015313432.1 MATE family efflux transporter -
  VPBB_RS20885 (VPBB_A1128) - 1269201..1270178 (-) 978 WP_015313433.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41397.75 Da        Isoelectric Point: 5.0568

>NTDB_id=55553 VPBB_RS20855 WP_015313428.1 1264218..1265315(-) (luxP) [Vibrio parahaemolyticus BB22OP]
MNKALVLSLISIVGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGTVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=55553 VPBB_RS20855 WP_015313428.1 1264218..1265315(-) (luxP) [Vibrio parahaemolyticus BB22OP]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGTCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTACCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCCGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGCCCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTGAAAAGCAATTCTGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACATGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTAGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCTGCAAAAGCCAGCTTGAAAAAATACCCAGATGTGGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTACCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTAATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCGATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAGCCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.011

99.726

0.638

Multiple sequence alignment