Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   J8Y18_RS12230 Genome accession   NZ_CP072774
Coordinates   2366700..2366978 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus cereus strain BC33     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2361700..2371978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8Y18_RS12210 (J8Y18_12210) - 2362462..2363064 (+) 603 WP_000517271.1 hypothetical protein -
  J8Y18_RS12215 (J8Y18_12215) - 2363351..2364532 (+) 1182 WP_060852132.1 agmatine deiminase family protein -
  J8Y18_RS12220 (J8Y18_12220) - 2365056..2365307 (-) 252 WP_048538843.1 helix-turn-helix transcriptional regulator -
  J8Y18_RS12225 (J8Y18_12225) - 2365682..2366559 (+) 878 Protein_2346 helix-turn-helix domain-containing protein -
  J8Y18_RS12230 (J8Y18_12230) abrB 2366700..2366978 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  J8Y18_RS12235 (J8Y18_12235) - 2367500..2368750 (+) 1251 WP_001032360.1 hypothetical protein -
  J8Y18_RS12240 (J8Y18_12240) - 2368818..2369576 (+) 759 WP_000347981.1 TSUP family transporter -
  J8Y18_RS12245 (J8Y18_12245) - 2369830..2370489 (+) 660 WP_017658008.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=555502 J8Y18_RS12230 WP_000842216.1 2366700..2366978(+) (abrB) [Bacillus cereus strain BC33]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=555502 J8Y18_RS12230 WP_000842216.1 2366700..2366978(+) (abrB) [Bacillus cereus strain BC33]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489