Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   VPBB_RS18495 Genome accession   NC_019971
Coordinates   724802..726850 (+) Length   682 a.a.
NCBI ID   WP_015313131.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus BB22OP     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 719802..731850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPBB_RS18475 (VPBB_A0650) dcuC 720114..721481 (-) 1368 WP_005454288.1 anaerobic C4-dicarboxylate transporter DcuC -
  VPBB_RS18480 (VPBB_A0651) - 721835..722959 (-) 1125 WP_005454080.1 fatty acid desaturase -
  VPBB_RS18485 (VPBB_A0652) - 723231..723779 (+) 549 WP_015313129.1 GNAT family N-acetyltransferase -
  VPBB_RS18490 (VPBB_A0653) - 723865..724482 (-) 618 WP_015313130.1 HAD family phosphatase -
  VPBB_RS18495 (VPBB_A0654) cqsS 724802..726850 (+) 2049 WP_015313131.1 hybrid sensor histidine kinase/response regulator Regulator
  VPBB_RS18500 (VPBB_A0655) cqsA 726928..728109 (-) 1182 WP_005486564.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  VPBB_RS18505 (VPBB_A0656) ylqF 728464..729408 (-) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  VPBB_RS18510 - 729697..730434 (-) 738 WP_025637687.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78208.96 Da        Isoelectric Point: 5.8750

>NTDB_id=55550 VPBB_RS18495 WP_015313131.1 724802..726850(+) (cqsS) [Vibrio parahaemolyticus BB22OP]
MDSIRKVYEYAEPNLTLVGWMGFIGFPLYYFVWDFMFPQSYENLPLRLFCSALFFGIIFRNRLSSSWRKYVHVYYQITIT
TCLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWIAKGFHLDITMDWTHVPIFLFIY
VFGNMFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSVLPNKKAIGEKDQYVMSGEDVTLLREVSEDAM
NIIHSGNETIDLLLTSIDENRVSRSSFKRYSAQSVVEKAIESFSYKRSTDRFAISFDARSEFDFLGSDTLLKYVMYNLFK
NAFHHRSSDEFHIHVSMQSNDTANQIVVTDNGSGIAPDVIRHIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIKCISQP
GEWSQFTLTFPPITSDTVTEIKDELTKMKSILLVSNQDIIVQKMADISRFMGFDVTVLDVKSVFKKKEYEFEFDLIFVDV
ESLDVLENQLDRIESLLSFTEARVVYLFEHKPAQRAKKAGHDPIWVETQAWLLNTKATIERLLYDSTYISSTLPSAPLDK
SIKRTIMVVDDNESLRKFTAMLLEKQGFEVVQKEDGQQALDTLEKENIDLILMDIEMPIVDGVEASRRIRNSEKPYATVP
IIAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=55550 VPBB_RS18495 WP_015313131.1 724802..726850(+) (cqsS) [Vibrio parahaemolyticus BB22OP]
ATGGATTCGATACGTAAGGTATATGAGTACGCAGAGCCCAATTTAACATTAGTTGGTTGGATGGGATTTATTGGCTTCCC
GCTCTACTACTTCGTTTGGGACTTCATGTTCCCGCAATCCTATGAAAACTTGCCGCTACGTTTGTTCTGTTCCGCACTGT
TTTTTGGCATCATTTTTCGTAACCGTTTGTCGTCATCATGGCGAAAGTACGTGCACGTCTATTATCAAATAACGATTACG
ACCTGTTTACCTTTCTTCTTTTTTTATATGTTGCTCATGAATGATTGGTCCAATGTTTGGGTGATGTCATTCATGTCGGC
TATTTTCCTGCATATTTTGTTGGTTCATGTCACAAGGGTCATGTTTGCTCAGACGTTCGCTGGTATTGGTCTAGCGACGT
TTTTTGCGTGGATCGCGAAAGGCTTTCATCTCGATATCACAATGGATTGGACGCATGTACCGATATTTTTGTTTATTTAT
GTGTTTGGCAACATGTTCTATTTCCGAAATCAGGTCGAGCATGAAGCAAAAGTATCGCTCGCTAAGTCGTTTGGCGCTGG
TATTGCTCATGAAATGCGTAATCCACTCAGTGGCTTATGTACGTCGATAGATGTTATTCAGTCTGTCTTGCCTAACAAAA
AGGCGATAGGTGAAAAAGATCAGTATGTGATGAGTGGTGAAGACGTAACCTTGCTCCGTGAAGTGAGCGAAGATGCGATG
AACATTATTCATTCAGGCAACGAGACAATCGATTTATTGCTCACATCGATTGATGAAAACCGCGTATCTCGCTCTTCCTT
CAAAAGATATTCTGCTCAATCGGTGGTTGAAAAAGCCATTGAGAGTTTCAGTTATAAACGTTCGACAGACAGGTTCGCGA
TCTCATTCGATGCAAGAAGTGAGTTTGATTTTTTGGGTAGCGATACATTGTTAAAGTACGTCATGTATAACTTGTTTAAG
AACGCATTTCATCATCGCAGCTCAGACGAGTTTCATATTCATGTGAGTATGCAGAGTAATGACACGGCTAACCAAATTGT
AGTGACGGACAATGGCTCAGGTATCGCGCCTGATGTGATTCGACATATCTTTCAGGACTTCTATACCACAGGTAAATCGG
GCAGTTATGGCCTTGGACTACCGTTCTGTAAGAAAGTTATGCGTTCATTTGGTGGTAATATTAAGTGCATTTCCCAGCCG
GGAGAGTGGTCACAGTTTACGTTGACTTTTCCACCTATCACATCAGATACGGTAACGGAAATTAAAGACGAACTGACCAA
AATGAAATCAATTTTATTGGTCAGTAATCAAGACATTATCGTGCAAAAAATGGCTGATATTAGTCGCTTCATGGGATTTG
ATGTCACCGTTTTAGATGTAAAAAGCGTCTTTAAAAAGAAAGAATACGAGTTTGAATTTGACCTGATATTCGTCGATGTG
GAAAGCCTTGATGTTTTAGAAAACCAATTAGACAGAATCGAATCGTTACTTTCATTTACTGAAGCGCGTGTGGTGTATCT
TTTTGAGCACAAACCTGCTCAACGAGCTAAAAAAGCTGGCCATGACCCGATTTGGGTAGAGACTCAAGCGTGGCTGCTAA
ATACCAAAGCTACGATTGAACGTTTGCTTTACGATTCCACTTATATCTCGTCAACCTTGCCATCTGCGCCTTTAGATAAA
TCCATCAAGCGAACCATCATGGTTGTGGATGATAACGAGTCTCTGCGTAAGTTTACGGCGATGTTACTAGAGAAGCAGGG
ATTTGAAGTGGTACAAAAGGAAGATGGTCAGCAAGCATTGGACACTCTTGAAAAAGAAAATATCGATCTGATTTTAATGG
ATATTGAGATGCCAATCGTGGACGGAGTAGAAGCGTCGCGACGTATCCGTAACTCAGAAAAGCCGTATGCAACTGTGCCG
ATTATTGCGCATACGGGAGACAGTTCTCCTGTGACGCTAGATAAAATTGGCTCATCCGGCATGTCCGACTTTATCGTTAA
ACCCGCTGATAAGAATCGCCTTTTCGATAAAATTGCTAACTGGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(566-678)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.977

100

0.491

Multiple sequence alignment