Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   J8Y18_RS06515 Genome accession   NZ_CP072774
Coordinates   1261031..1261354 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain BC33     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1256031..1266354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8Y18_RS06490 (J8Y18_06490) - 1256326..1257612 (+) 1287 WP_048538165.1 D-alanyl-D-alanine carboxypeptidase family protein -
  J8Y18_RS06495 (J8Y18_06495) - 1257803..1258372 (+) 570 WP_000767792.1 signal peptidase I -
  J8Y18_RS06500 (J8Y18_06500) - 1258433..1259020 (+) 588 WP_000172852.1 CalY family protein -
  J8Y18_RS06505 (J8Y18_06505) - 1259155..1259979 (+) 825 WP_017657918.1 DUF4047 domain-containing protein -
  J8Y18_RS06510 (J8Y18_06510) calY 1260365..1260958 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  J8Y18_RS06515 (J8Y18_06515) sinR 1261031..1261354 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  J8Y18_RS06520 (J8Y18_06520) - 1261434..1261568 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  J8Y18_RS06525 (J8Y18_06525) inhA1 1261911..1264301 (+) 2391 WP_001035936.1 M6 family metalloprotease immune inhibitor InhA1 -
  J8Y18_RS06530 (J8Y18_06530) - 1264473..1265840 (+) 1368 WP_017657917.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=555498 J8Y18_RS06515 WP_000578885.1 1261031..1261354(-) (sinR) [Bacillus cereus strain BC33]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=555498 J8Y18_RS06515 WP_000578885.1 1261031..1261354(-) (sinR) [Bacillus cereus strain BC33]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692