Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   J8Y17_RS21350 Genome accession   NZ_CP072769
Coordinates   4090654..4091400 (-) Length   248 a.a.
NCBI ID   WP_063222930.1    Uniprot ID   A0A2B0XAC6
Organism   Bacillus cereus strain BC07     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4085654..4096400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8Y17_RS21330 (J8Y17_21330) dnaG 4086421..4088217 (-) 1797 WP_088311958.1 DNA primase -
  J8Y17_RS21335 (J8Y17_21335) - 4088872..4089036 (-) 165 WP_211480120.1 hypothetical protein -
  J8Y17_RS21340 (J8Y17_21340) - 4089072..4089884 (-) 813 WP_000368943.1 pyruvate, water dikinase regulatory protein -
  J8Y17_RS21345 (J8Y17_21345) - 4089914..4090546 (-) 633 WP_000583759.1 helix-turn-helix transcriptional regulator -
  J8Y17_RS21350 (J8Y17_21350) recO 4090654..4091400 (-) 747 WP_063222930.1 DNA repair protein RecO Machinery gene
  J8Y17_RS21355 (J8Y17_21355) - 4091434..4091577 (-) 144 WP_000883924.1 YqzL family protein -
  J8Y17_RS21360 (J8Y17_21360) era 4091754..4092659 (-) 906 WP_001080241.1 GTPase Era -
  J8Y17_RS21365 (J8Y17_21365) - 4092652..4093050 (-) 399 WP_001086294.1 cytidine deaminase -
  J8Y17_RS21370 (J8Y17_21370) - 4093150..4093503 (-) 354 WP_000715480.1 diacylglycerol kinase family protein -
  J8Y17_RS21375 (J8Y17_21375) ybeY 4093500..4093970 (-) 471 WP_000054692.1 rRNA maturation RNase YbeY -
  J8Y17_RS21380 (J8Y17_21380) - 4093967..4096111 (-) 2145 WP_071728446.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28655.18 Da        Isoelectric Point: 8.0540

>NTDB_id=555464 J8Y17_RS21350 WP_063222930.1 4090654..4091400(-) (recO) [Bacillus cereus strain BC07]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDSEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=555464 J8Y17_RS21350 WP_063222930.1 4090654..4091400(-) (recO) [Bacillus cereus strain BC07]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTTTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGTCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAATTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATTCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGACACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTAGAGAGGGCGGTTTTCTGTGCTCACGTCATGCTGAACAAGATCAGTATCGTATACCAGTGGG
GGAAGCTGTTCATAAATTATTGCGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTGTTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.061

99.597

0.548