Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   J8Y17_RS21085 Genome accession   NZ_CP072769
Coordinates   4038403..4039446 (-) Length   347 a.a.
NCBI ID   WP_071728427.1    Uniprot ID   -
Organism   Bacillus cereus strain BC07     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4033403..4044446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8Y17_RS21040 (J8Y17_21040) - 4033830..4034030 (-) 201 WP_000106081.1 YqzE family protein -
  J8Y17_RS21045 (J8Y17_21045) aroK 4034069..4034566 (-) 498 WP_071728422.1 shikimate kinase AroK -
  J8Y17_RS21050 (J8Y17_21050) - 4034687..4035337 (-) 651 WP_071728423.1 2OG-Fe(II) oxygenase -
  J8Y17_RS21055 (J8Y17_21055) comGG 4035513..4035884 (-) 372 WP_071728424.1 competence type IV pilus minor pilin ComGG -
  J8Y17_RS21060 (J8Y17_21060) comGF 4035881..4036351 (-) 471 WP_071728425.1 competence type IV pilus minor pilin ComGF -
  J8Y17_RS21065 (J8Y17_21065) comGE 4036321..4036623 (-) 303 WP_000829458.1 competence type IV pilus minor pilin ComGE -
  J8Y17_RS21070 (J8Y17_21070) comGD 4036616..4037071 (-) 456 WP_000810395.1 comG operon protein ComGD -
  J8Y17_RS21075 (J8Y17_21075) comGC 4037068..4037367 (-) 300 WP_001178696.1 comG operon protein ComGC -
  J8Y17_RS21080 (J8Y17_21080) comGB 4037379..4038410 (-) 1032 WP_071728426.1 comG operon protein ComGB -
  J8Y17_RS21085 (J8Y17_21085) comGA 4038403..4039446 (-) 1044 WP_071728427.1 competence protein ComGA Machinery gene
  J8Y17_RS21090 (J8Y17_21090) - 4039651..4040346 (+) 696 WP_071728428.1 helix-turn-helix domain-containing protein -
  J8Y17_RS21095 (J8Y17_21095) - 4040472..4040714 (+) 243 WP_000440721.1 DUF2626 domain-containing protein -
  J8Y17_RS21100 (J8Y17_21100) - 4040822..4042216 (+) 1395 WP_001094339.1 L-cystine transporter -
  J8Y17_RS21105 (J8Y17_21105) - 4042433..4042648 (-) 216 WP_001008322.1 DUF3912 family protein -
  J8Y17_RS21110 (J8Y17_21110) - 4042901..4043212 (+) 312 WP_001093243.1 hypothetical protein -
  J8Y17_RS21115 (J8Y17_21115) - 4043249..4043737 (-) 489 WP_071728429.1 hypothetical protein -
  J8Y17_RS21120 (J8Y17_21120) - 4043817..4044191 (-) 375 WP_001012352.1 nucleoside 2-deoxyribosyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39243.73 Da        Isoelectric Point: 9.2324

>NTDB_id=555463 J8Y17_RS21085 WP_071728427.1 4038403..4039446(-) (comGA) [Bacillus cereus strain BC07]
MNGIESFANTILKEACRVQASDLHIVPRQKDVVVQLRIGKDLMTKQCIEKGFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLHYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRSDDLLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDARGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLQSSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=555463 J8Y17_RS21085 WP_071728427.1 4038403..4039446(-) (comGA) [Bacillus cereus strain BC07]
ATGAATGGAATTGAAAGCTTTGCGAATACGATTTTGAAAGAAGCGTGTAGGGTACAAGCGTCGGACTTACATATTGTGCC
CCGACAGAAGGATGTAGTGGTTCAACTGCGTATAGGAAAAGATTTAATGACGAAACAATGCATTGAAAAGGGGTTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCCATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAGGAAGTGTATTTACGTCTTTCCACGCTTCCAACTGTATATCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
ATTATTCCCATGGATTACTCGTATTTACTGGACCGACTGGTTCGGGGAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGCCGCATCGTTACATTGGAGGATCCAGTTGAAAAAAGAAGTGACGATTTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATTGCTATAAGAGCAAGTTTGACTGGACATTTAGTAATGACGACACTGCAT
ACGAATGATGCGAGAGGGGCGATACTCAGGTTCATGGATTTTGGCATAACAAGGCAAGAAATCGAACAATCTTTATTAGC
TATAGCTGCACAGCGACTTGTCGAATTAAAGTGTCCGTTTTGCAAAAGAAAGTGCTCAACTTTATGCAAATCAATGAGGC
AAGTAAGGCAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACATACAAGCACGAAACATTACAATCTTCGATACGAAAAGGATACGCTTTAGGGTTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.349

100

0.573
  pilB Vibrio campbellii strain DS40M4

35.977

100

0.366