Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   J8Y17_RS06435 Genome accession   NZ_CP072769
Coordinates   1234638..1234961 (-) Length   107 a.a.
NCBI ID   WP_000578877.1    Uniprot ID   A0A3P1BX61
Organism   Bacillus cereus strain BC07     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1229638..1239961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8Y17_RS06410 (J8Y17_06410) - 1229833..1231119 (+) 1287 WP_088668088.1 D-alanyl-D-alanine carboxypeptidase family protein -
  J8Y17_RS06415 (J8Y17_06415) - 1231312..1231881 (+) 570 WP_000767817.1 signal peptidase I SipW -
  J8Y17_RS06420 (J8Y17_06420) - 1231944..1232531 (+) 588 WP_000172849.1 CalY family protein -
  J8Y17_RS06425 (J8Y17_06425) - 1232693..1233535 (+) 843 WP_211479906.1 DUF4047 domain-containing protein -
  J8Y17_RS06430 (J8Y17_06430) calY 1233968..1234561 (+) 594 WP_000053730.1 biofilm matrix protein CalY -
  J8Y17_RS06435 (J8Y17_06435) sinR 1234638..1234961 (-) 324 WP_000578877.1 helix-turn-helix domain-containing protein Regulator
  J8Y17_RS06440 (J8Y17_06440) - 1235041..1235175 (-) 135 WP_000276214.1 anti-repressor SinI family protein -
  J8Y17_RS06445 (J8Y17_06445) inhA1 1235519..1237909 (+) 2391 WP_071727904.1 M6 family metalloprotease immune inhibitor InhA1 -
  J8Y17_RS06450 (J8Y17_06450) - 1238081..1239448 (+) 1368 WP_211479907.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12320.15 Da        Isoelectric Point: 8.5404

>NTDB_id=555451 J8Y17_RS06435 WP_000578877.1 1234638..1234961(-) (sinR) [Bacillus cereus strain BC07]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=555451 J8Y17_RS06435 WP_000578877.1 1234638..1234961(-) (sinR) [Bacillus cereus strain BC07]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P1BX61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692