Detailed information NTG0555427

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: J8Y16_RS25360
• Genome accession: NZ_CP072766
• Coordinates: 4887499..4888848 (-)
• Length: 449 a.a.
• NCBI ID: WP_212804421.1
• Uniprot ID: -
• Organism: Bacillus cereus strain BC06
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4882499..4893848

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J8Y16_RS25340 (J8Y16_25340)	secA	4882820..4885327 (-)	2508	WP_000579368.1	preprotein translocase subunit SecA	-
J8Y16_RS25345 (J8Y16_25345)	raiA	4885604..4886146 (-)	543	WP_000671189.1	ribosome-associated translation inhibitor RaiA	-
J8Y16_RS25350 (J8Y16_25350)	cspC	4886471..4886668 (-)	198	WP_001990088.1	cold shock protein CspC	-
J8Y16_RS25355 (J8Y16_25355)	comFC	4886795..4887499 (-)	705	WP_212804420.1	comF operon protein ComFC	-
J8Y16_RS25360 (J8Y16_25360)	comFA	4887499..4888848 (-)	1350	WP_212804421.1	ATP-dependent helicase ComFA	Machinery gene
J8Y16_RS25365 (J8Y16_25365)	-	4888976..4890404 (-)	1429	Protein_4957	NlpC/P60 family protein	-
J8Y16_RS25370 (J8Y16_25370)	-	4890552..4890866 (-)	315	WP_000400857.1	helix-turn-helix domain-containing protein	-
J8Y16_RS25375 (J8Y16_25375)	-	4891040..4891882 (-)	843	WP_000844766.1	DegV family protein	-
J8Y16_RS25380 (J8Y16_25380)	-	4892122..4892757 (+)	636	WP_212804422.1	YigZ family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51267.97 Da
• Isoelectric Point: 9.8364

>NTDB_id=555427 J8Y16_RS25360 WP_212804421.1 4887499..4888848(-) (comFA) [Bacillus cereus strain BC06]
MVAGKQLLLEELSSDLRRELSDSKKKGEIICVQGVIKKASKYICQRCGNIEQRLFASFLCKRCNKVCTYCRKCITMGRVS
ECAVLVRGIHERKGERELHSLQWKGSLSLGQQLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGIEEALQKGERVCIAT
PRTDVVLELVPRLQEVFPSINVAALYGGSVDREKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVQQAM
KEKAARIYLTATPDEKWKRNFRRGKQKGIIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMYVNKKYPIFL
FVPHVRYIEEMSLLLKGLDHRIDGVHAEDPMRKEKVAAFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVVYFHYGKTESMVRAKRHIQSMNKSAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=555427 J8Y16_RS25360 WP_212804421.1 4887499..4888848(-) (comFA) [Bacillus cereus strain BC06]
ATGGTTGCTGGAAAGCAGTTACTATTAGAAGAACTCTCTTCAGATTTACGGAGAGAATTAAGTGATTCGAAAAAGAAGGG
AGAGATCATATGTGTACAAGGTGTAATAAAGAAGGCTTCTAAATATATATGTCAGCGCTGCGGGAATATAGAGCAGCGGC
TATTTGCATCATTTTTATGTAAAAGGTGCAATAAAGTATGTACGTATTGCCGCAAGTGTATAACGATGGGGAGAGTTAGT
GAATGTGCTGTACTTGTTCGTGGGATTCACGAAAGAAAAGGAGAAAGGGAATTACATTCGTTACAGTGGAAAGGGAGTTT
GTCTCTTGGTCAGCAGCTGGCGGCGCAAGGTGTTATAGAAGCTATTAAGCAGAAAGAATCTTTTTTTATTTGGGCTGTGT
GCGGGGCCGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAGGCACTTCAAAAAGGAGAAAGAGTGTGTATCGCAACA
CCAAGGACGGACGTTGTACTGGAATTAGTACCGAGATTACAAGAAGTGTTTCCAAGTATAAATGTAGCTGCTTTATACGG
AGGGAGTGTAGATCGTGAAAAAGATGCAGCGTTAGTCGTTGCAACGACTCACCAACTGTTACGTTACTATAGAGCATTTC
ATGTGATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCGGATCAAATGTTACAGTATGCAGTGCAGCAAGCGATG
AAAGAGAAAGCAGCGCGTATTTATTTAACTGCAACCCCTGATGAAAAGTGGAAGCGCAATTTCAGAAGAGGGAAACAAAA
AGGTATCATTGTCTCTGGACGATACCATCGTCATCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAAAAAAATTCCTCGTGTGTTACTACAATGGTTAAAAATGTACGTAAACAAAAAATACCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATGAGCCTGTTATTGAAAGGGTTGGATCATAGAATCGATGGCGTACATGC
AGAAGATCCGATGAGAAAGGAAAAAGTGGCAGCGTTTAGAAAGGGAGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGGGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGGGCTGAAGAAGAAATATTTTCAGAAAGTGCGCTAGTA
CAAATTGCAGGCCGAGCAGGTCGTAGTTTTGAAGAACCGTATGGTGAGGTTGTTTATTTTCACTACGGCAAGACAGAGTC
GATGGTACGTGCGAAAAGACATATTCAAAGTATGAACAAAAGTGCGAAAGAACAAGGATTAATTGATTAA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (108-254)

• Helicase conserved C-terminal domain (Helicase_C) (312-408)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	52.074	96.659	0.503
comFA	Latilactobacillus sakei subsp. sakei 23K	40.5	89.087	0.361