Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   J8Y16_RS20580 Genome accession   NZ_CP072766
Coordinates   3986520..3987563 (-) Length   347 a.a.
NCBI ID   WP_001013200.1    Uniprot ID   A0AA96SWA8
Organism   Bacillus cereus strain BC06     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3981520..3992563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8Y16_RS20535 (J8Y16_20535) - 3981947..3982147 (-) 201 WP_000106081.1 YqzE family protein -
  J8Y16_RS20540 (J8Y16_20540) aroK 3982186..3982683 (-) 498 WP_000836631.1 shikimate kinase AroK -
  J8Y16_RS20545 (J8Y16_20545) - 3982804..3983454 (-) 651 WP_212804234.1 2OG-Fe(II) oxygenase -
  J8Y16_RS20550 (J8Y16_20550) comGG 3983630..3984001 (-) 372 WP_078420379.1 competence type IV pilus minor pilin ComGG -
  J8Y16_RS20555 (J8Y16_20555) comGF 3983998..3984468 (-) 471 WP_212805314.1 competence type IV pilus minor pilin ComGF -
  J8Y16_RS20560 (J8Y16_20560) comGE 3984438..3984740 (-) 303 WP_000829458.1 competence type IV pilus minor pilin ComGE -
  J8Y16_RS20565 (J8Y16_20565) comGD 3984733..3985188 (-) 456 WP_000810395.1 comG operon protein ComGD -
  J8Y16_RS20570 (J8Y16_20570) comGC 3985185..3985484 (-) 300 WP_001178696.1 comG operon protein ComGC -
  J8Y16_RS20575 (J8Y16_20575) comGB 3985496..3986527 (-) 1032 WP_212804235.1 comG operon protein ComGB -
  J8Y16_RS20580 (J8Y16_20580) comGA 3986520..3987563 (-) 1044 WP_001013200.1 competence protein ComGA Machinery gene
  J8Y16_RS20585 (J8Y16_20585) - 3987769..3988464 (+) 696 WP_000434117.1 helix-turn-helix domain-containing protein -
  J8Y16_RS20590 (J8Y16_20590) - 3988590..3988832 (+) 243 WP_000440711.1 DUF2626 domain-containing protein -
  J8Y16_RS20595 (J8Y16_20595) - 3988940..3990334 (+) 1395 WP_212804236.1 L-cystine transporter -
  J8Y16_RS20600 (J8Y16_20600) - 3990551..3990766 (-) 216 WP_001008320.1 DUF3912 family protein -
  J8Y16_RS20605 (J8Y16_20605) - 3991019..3991330 (+) 312 WP_001093243.1 hypothetical protein -
  J8Y16_RS20610 (J8Y16_20610) - 3991367..3991855 (-) 489 WP_000764278.1 hypothetical protein -
  J8Y16_RS20615 (J8Y16_20615) - 3991935..3992309 (-) 375 WP_001012353.1 nucleoside 2-deoxyribosyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39412.97 Da        Isoelectric Point: 9.2147

>NTDB_id=555416 J8Y16_RS20580 WP_001013200.1 3986520..3987563(-) (comGA) [Bacillus cereus strain BC06]
MNGIESFANMILKEACRVQASDLHIVPRQKDVVVQLRIGKDLMTKYCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLRYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDARGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLQSSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=555416 J8Y16_RS20580 WP_001013200.1 3986520..3987563(-) (comGA) [Bacillus cereus strain BC06]
ATGAATGGAATTGAAAGCTTTGCGAATATGATTTTGAAAGAAGCGTGCAGGGTACAAGCGTCGGACTTACATATTGTGCC
CCGGCAGAAGGATGTAGTGGTTCAGCTGCGTATAGGAAAAGATTTAATGACGAAATACTGTATTGAAAAGGAATTTGGAG
AAAAACTTGTTTCGCACTTTAAATTTTTAGCATCTATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAAGAAGTGTATTTGCGCCTTTCCACGCTTCCAACCGTATACCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
GTTATTCTCATGGATTACTCGTATTTACTGGACCGACTGGTTCGGGGAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGTCGCATCGTTACACTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATTGCTATAAGAGCAAGTTTGACTGGCCATTTAGTAATGACGACATTGCAT
ACGAATGATGCGAGAGGGGCGATACTTCGGTTCATGGATTTTGGCATAACGAGGCAAGAAATCGAACAATCTTTATTAGC
TATAGCTGCACAGCGACTTGTCGAATTAAAGTGTCCGTTTTGCAAAAGAAAGTGCTCAACTTTATGCAAATCAATGAGGC
AAGTAAGGCAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACATACAAGCACGAAACATTACAATCTTCGATACGAAAAGGATACGCTTTAGGGTTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.925

100

0.579
  pilB Vibrio campbellii strain DS40M4

35.977

100

0.366